Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34984 | Canola | extracellular | 42.98 | 44.14 |
| CDY52726 | Canola | extracellular | 40.35 | 31.51 |
| AT3G16970.1 | Thale cress | cytosol | 38.6 | 31.43 |
| AT3G17080.1 | Thale cress | extracellular | 33.33 | 28.36 |
| AT1G04645.1 | Thale cress | extracellular | 23.68 | 21.09 |
| AT4G16195.1 | Thale cress | extracellular | 28.07 | 19.88 |
| AT4G24973.1 | Thale cress | extracellular | 21.93 | 18.66 |
| AT4G24975.1 | Thale cress | extracellular | 21.93 | 18.52 |
| AT5G12070.1 | Thale cress | extracellular | 22.81 | 17.11 |
| AT5G12060.1 | Thale cress | extracellular | 21.05 | 16.0 |
| AT4G24974.1 | Thale cress | extracellular | 18.42 | 15.91 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 22.81 | 15.2 |
Protein Annotations
| ArrayExpress:AT3G16960 | EnsemblPlants:AT3G16960.1 | EnsemblPlantsGene:AT3G16960 | EntrezGene:820952 | GO:GO:0008150 | InterPro:Self-incomp_S1 |
| PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | ProteinID:AEE75889.1 | ProteinID:OAP04378.1 | RefSeq:AT3G16960 | RefSeq:AT3G16960-TAIR-G |
| RefSeq:NP_188321.1 | SignalP:SignalP-noTM | TAIR:AT3G16960 | TAIR:AT3G16960.1 | Unigene:At.51361 | UniParc:UPI000016340C |
| UniProt:A0A178VFC8 | UniProt:F4J3Y5 | MapMan:35.2 | : | : | : |
Description
Plant self-incompatibility protein S1 family protein [Source:UniProtKB/TrEMBL;Acc:F4J3Y5]
Coordinates
chr3:-:5791812..5792264
Molecular Weight (calculated)
12666.5 Da
IEP (calculated)
6.481
GRAVY (calculated)
-0.096
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALAELVAL IIVMCASVTM SLAQNPMASP PSVENPNTTV VIHNALSGYW PMAYHCASKD VDFGLRRMLA ERDQESAMFG CKRCEWKIRE EGPCKLNKKT
101: GMFDLCPPWD SQNI
101: GMFDLCPPWD SQNI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.