CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72702
CDX90332
CDY02804
CDY12143
CDY32716
CDY41977
CDY53185
CDY66903
CDY66904

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58220.1	CDX72702	AT4G39400.1	15319482
AT5G58220.1	CDX90332	AT4G39400.1	15319482
AT5G58220.1	CDY12143	AT4G39400.1	15319482
AT5G58220.1	CDY41977	AT4G39400.1	15319482
AT5G58220.1	CDY53185	AT4G39400.1	15319482
AT5G58220.1	CDY66903	AT4G39400.1	15319482
AT5G58220.1	CDY66904	AT4G39400.1	15319482
AT5G58220.1	CDY02804	AT5G58220.1	21798944
AT5G58220.1	CDY32716	AT5G58220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32716	Canola	cytosol	95.58	94.69
AT5G58220.1	Thale cress	cytosol	82.02	80.25
KRH66244	Soybean	cytosol, nucleus, peroxisome	62.46	59.64
VIT_09s0018g01180.t01	Wine grape	cytosol, nucleus, peroxisome	61.51	59.09
KRH07309	Soybean	cytosol, nucleus, peroxisome	61.83	59.04
Solyc01g080940.2.1	Tomato	cytoskeleton, cytosol, peroxisome	61.51	58.21
PGSC0003DMT400004592	Potato	cytoskeleton, cytosol, peroxisome	60.88	57.61
GSMUA_Achr5P13910_001	Banana	peroxisome	59.94	57.23
OQU92482	Sorghum	cytosol	57.41	54.82
TraesCS4D01G200200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	57.1	54.52
TraesCS4B01G199200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.15	53.61
TraesCS4A01G104800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	55.84	53.31
HORVU4Hr1G057650.8	Barley	cytosol, mitochondrion, peroxisome, plastid	55.2	52.71
Os03t0390700-01	Rice	plasma membrane	55.52	52.69
Zm00001d047217_P001	Maize	cytosol	55.52	51.46
TraesCS1A01G421400.1	Wheat	plastid	26.81	50.6
GSMUA_Achr5P13880_001	Banana	cytosol	28.39	50.56
HORVU4Hr1G057640.1	Barley	cytosol	9.15	46.03
TraesCS2B01G044200.1	Wheat	mitochondrion	10.73	24.64

Protein Annotations

KEGG:00230+3.5.2.17	KEGG:00230+4.1.1.97	Gene3D:1.10.3330.10	Gene3D:2.60.40.180	MapMan:6.1.4.7	GO:A0A078EQ46
EnsemblPlants:CDY02804	ProteinID:CDY02804	ProteinID:CDY02804.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0006144	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033971
EnsemblPlantsGene:GSBRNA2T00114980001	InterPro:Hydroxyisourate_hydrolase	InterPro:IPR036778	InterPro:IPR036817	InterPro:OHCU_decarboxylase	InterPro:OHCU_decarboxylase_sf
PFAM:PF00576	PFAM:PF09349	ScanProsite:PS00768	ScanProsite:PS00769	PANTHER:PTHR10395	PANTHER:PTHR10395:SF7
MetaCyc:PWY-5691	MetaCyc:PWY-7394	SUPFAM:SSF158694	SUPFAM:SSF49472	TIGRFAMs:TIGR02962	InterPro:Thyroxine_BS
InterPro:Transthyretin/HIU_hydrolase_d	InterPro:Transthyretin/HIU_hydrolase_sf	InterPro:Transthyretin_CS	UniPathway:UPA00394	UniParc:UPI0004EB4C36	:

Description

BnaC02g10850D

Coordinates

chrLK031937:-:529425..531042

Molecular Weight (calculated)

34918.4 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.261

Length

317 amino acids

Sequence
(BLAST)

001: MAMEIREGDW KVCCGSSDFA KLMVKGSPFN SLEAAIESAR DIWFNQVNVA AWLEAFAAHP QIGKSPSPSS NSDFARRSVT EQSRAFATTS ASALEELAEW
101: NVLYRQKFGF IFIICASGRT HAEMLAELKG RYANRPIVEL EIAAKEQMKI TELRMAKLFS EKAKVVSQTE STKPQEDRLR IIGGHLNVAE APKRSRPPIT
201: THVLDVSRGA PAAGVEVHLE VWNGTTSPSF GHGGRGDWSM VGTSATDKDG RSGQLMDLVE SLNPGTYRIS FNTGKYCPGG FFPYVSIAFE VTESQKLEHF
301: HVPLLLSPFS FTTYRGS

Best Arabidopsis Sequence Match ( AT5G58220.1 )
(BLAST)

001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS

Arabidopsis Description

TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.