CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07309
KRH53813
KRH64131
KRH66244

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58220.1	KRH53813	AT4G39400.1	15319482
AT5G58220.1	KRH64131	AT4G39400.1	15319482
AT5G58220.1	KRH07309	AT5G58220.1	21798944
AT5G58220.1	KRH66244	AT5G58220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07309	Soybean	cytosol, nucleus, peroxisome	90.66	90.66
VIT_09s0018g01180.t01	Wine grape	cytosol, nucleus, peroxisome	69.58	70.0
Solyc01g080940.2.1	Tomato	cytoskeleton, cytosol, peroxisome	68.98	68.36
PGSC0003DMT400004592	Potato	cytoskeleton, cytosol, peroxisome	67.17	66.57
CDY02804	Canola	cytosol	59.64	62.46
Bra020380.1-P	Field mustard	cytosol, nucleus, peroxisome	58.73	60.94
CDY32716	Canola	cytosol	58.73	60.94
AT5G58220.1	Thale cress	cytosol	57.83	59.26
GSMUA_Achr5P13910_001	Banana	peroxisome	58.43	58.43
OQU92482	Sorghum	cytosol	56.93	56.93
TraesCS4A01G104800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.93	56.93
TraesCS4D01G200200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.63	56.63
HORVU4Hr1G057650.8	Barley	cytosol, mitochondrion, peroxisome, plastid	56.63	56.63
TraesCS4B01G199200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.63	56.63
TraesCS1A01G421400.1	Wheat	plastid	28.61	56.55
Os03t0390700-01	Rice	plasma membrane	56.02	55.69
GSMUA_Achr5P13880_001	Banana	cytosol	29.52	55.06
Zm00001d047217_P001	Maize	cytosol	54.82	53.22
HORVU4Hr1G057640.1	Barley	cytosol	9.34	49.21
TraesCS2B01G044200.1	Wheat	mitochondrion	11.45	27.54

Protein Annotations

KEGG:00230+3.5.2.17	KEGG:00230+4.1.1.97	Gene3D:1.10.3330.10	EntrezGene:100805930	Gene3D:2.60.40.180	MapMan:6.1.4.7
EMBL:ACUP02001931	EMBL:BT099352	UniProt:C6TNM5	EnsemblPlantsGene:GLYMA_03G093200	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0006144	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0033971	InterPro:Hydroxyisourate_hydrolase	InterPro:IPR036778	InterPro:IPR036817	EnsemblPlants:KRH66244	ProteinID:KRH66244
ProteinID:KRH66244.1	InterPro:OHCU_decarboxylase	InterPro:OHCU_decarboxylase_sf	PFAM:PF00576	PFAM:PF09349	PRINTS:PR00189
ScanProsite:PS00768	ScanProsite:PS00769	PANTHER:PTHR10395	PANTHER:PTHR10395:SF7	MetaCyc:PWY-5691	MetaCyc:PWY-7394
MetaCyc:PWY-7849	SUPFAM:SSF158694	SUPFAM:SSF49472	TIGRFAMs:TIGR02962	InterPro:Thyroxine_BS	InterPro:Transthyretin/HIU_hydrolase
InterPro:Transthyretin/HIU_hydrolase_d	InterPro:Transthyretin/HIU_hydrolase_sf	InterPro:Transthyretin_CS	UniParc:UPI0001B1706E	:	:

Description

hypothetical protein

Coordinates

chr3:+:27618965..27624224

Molecular Weight (calculated)

36395.5 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.325

Length

332 amino acids

Sequence
(BLAST)

001: MEFSFDEKDF VSCCGSTKFA KEMASASPFG SLQDAVSVAR DVWFNSVDVN GWLQAFSAHP QIGQSHAPSV ASEASAQWSK GEQSTALATA TGSSLQELSE
101: WNARYREKFG FVFLICAAGR STDEILAELK RRYTNRPIVE FEIAAREQMK ITELRLAKLF SSRENISSTA DKNSTARKAE EDRISIISSH MTATSESSTG
201: KSIQHPARTR PPITTHVLDV SRGAPAAGID VLLEVWRGTQ SQPTFGATGG GSWVFQGSSK TDSDGRSGQL LSIVDEASPG IYRISFNTGK YIPNGFFPYV
301: SIVFEIKESQ KREHFHVPLL LSPFSFSTYR GS

Best Arabidopsis Sequence Match ( AT5G58220.1 )
(BLAST)

001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS

Arabidopsis Description

TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.