Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- peroxisome 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0031g01850.t01 | |
| VIT_09s0018g01180.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58220.1 | VIT_07s0031g01850.t01 | AT4G39400.1 | 15319482 |
| AT5G58220.1 | VIT_09s0018g01180.t01 | AT5G58220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g080940.2.1 | Tomato | cytoskeleton, cytosol, peroxisome | 73.03 | 71.94 |
| PGSC0003DMT400004592 | Potato | cytoskeleton, cytosol, peroxisome | 70.91 | 69.85 |
| KRH66244 | Soybean | cytosol, nucleus, peroxisome | 70.0 | 69.58 |
| KRH07309 | Soybean | cytosol, nucleus, peroxisome | 69.7 | 69.28 |
| Os03t0390700-01 | Rice | plasma membrane | 62.42 | 61.68 |
| CDY02804 | Canola | cytosol | 59.09 | 61.51 |
| CDY32716 | Canola | cytosol | 59.39 | 61.25 |
| TraesCS4D01G200200.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 61.52 | 61.14 |
| Bra020380.1-P | Field mustard | cytosol, nucleus, peroxisome | 59.09 | 60.94 |
| GSMUA_Achr5P13910_001 | Banana | peroxisome | 61.21 | 60.84 |
| OQU92482 | Sorghum | cytosol | 60.91 | 60.54 |
| HORVU4Hr1G057650.8 | Barley | cytosol, mitochondrion, peroxisome, plastid | 60.91 | 60.54 |
| TraesCS4A01G104800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 60.61 | 60.24 |
| TraesCS4B01G199200.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 60.61 | 60.24 |
| AT5G58220.1 | Thale cress | cytosol | 57.58 | 58.64 |
| TraesCS1A01G421400.1 | Wheat | plastid | 28.48 | 55.95 |
| Zm00001d047217_P001 | Maize | cytosol | 57.58 | 55.56 |
| GSMUA_Achr5P13880_001 | Banana | cytosol | 28.48 | 52.81 |
| HORVU4Hr1G057640.1 | Barley | cytosol | 9.09 | 47.62 |
| TraesCS2B01G044200.1 | Wheat | mitochondrion | 12.73 | 30.43 |
Protein Annotations
| KEGG:00230+3.5.2.17 | KEGG:00230+4.1.1.97 | Gene3D:1.10.3330.10 | EntrezGene:100243214 | wikigene:100243214 | Gene3D:2.60.40.180 |
| MapMan:6.1.4.7 | ProteinID:CBI25230 | ProteinID:CBI25230.3 | UniProt:D7T3Z8 | EMBL:FN595513 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006139 | GO:GO:0006144 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0033971 | InterPro:Hydroxyisourate_hydrolase | InterPro:IPR036778 | InterPro:IPR036817 | EntrezGene:LOC100243214 |
| wikigene:LOC100243214 | InterPro:OHCU_decarboxylase | InterPro:OHCU_decarboxylase_sf | PFAM:PF00576 | PFAM:PF09349 | PRINTS:PR00189 |
| ScanProsite:PS00768 | ScanProsite:PS00769 | PANTHER:PTHR10395 | PANTHER:PTHR10395:SF7 | SUPFAM:SSF158694 | SUPFAM:SSF49472 |
| TIGR:TC68890 | TIGRFAMs:TIGR02962 | InterPro:Thyroxine_BS | InterPro:Transthyretin/HIU_hydrolase | InterPro:Transthyretin/HIU_hydrolase_d | InterPro:Transthyretin/HIU_hydrolase_sf |
| InterPro:Transthyretin_CS | UniParc:UPI0001BE26FF | ArrayExpress:VIT_09s0018g01180 | EnsemblPlantsGene:VIT_09s0018g01180 | EnsemblPlants:VIT_09s0018g01180.t01 | unigene:Vvi.14276 |
| RefSeq:XP_002268793 | RefSeq:XP_002268793.1 | RefSeq:XP_003632908 | RefSeq:XP_003632908.1 | : | : |
Description
No Description!
Coordinates
chr9:-:17951319..17962980
Molecular Weight (calculated)
36435.0 Da
IEP (calculated)
6.791
GRAVY (calculated)
-0.388
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKDFLACC GSKKFAEEMT SSGPFANLDQ AIDAARDIWF NKVDVNGWLE AFAAHPQIGQ NPSAKHPSDT SAQWSKGEQS TALQTATDSS LQELSDWNAR
101: YWKKFGFVFL ICASGRTASE ILAELKRRYP NRPIVEFEIA AQEQMKVTEL RLAKLFSTQV KAASISTQNP ETAAKKAGED RVSIIGAHLT ATSEASAGKT
201: PQISPRTRPP ITTHVLDVAR GSPAAGIEVR LEMWKGNQPR PLFGQEDEGG WVLEGSSITD KDGRSGQLMS MIDALNPGIY KISFNTGKYC PSGFFPYVSI
301: LFEIKESQKW EHFHVPLLLS PFSFSTYRGS
101: YWKKFGFVFL ICASGRTASE ILAELKRRYP NRPIVEFEIA AQEQMKVTEL RLAKLFSTQV KAASISTQNP ETAAKKAGED RVSIIGAHLT ATSEASAGKT
201: PQISPRTRPP ITTHVLDVAR GSPAAGIEVR LEMWKGNQPR PLFGQEDEGG WVLEGSSITD KDGRSGQLMS MIDALNPGIY KISFNTGKYC PSGFFPYVSI
301: LFEIKESQKW EHFHVPLLLS PFSFSTYRGS
001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS
Arabidopsis Description
TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.