Factsheet for TraesCS2B01G044200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G421400.1
TraesCS2B01G044200.1
TraesCS3A01G245000.1
TraesCS3A01G490100.1
TraesCS3B01G275000.1
TraesCS3B01G550900.1
TraesCS3B01G551200.1
TraesCS3D01G246500.1
TraesCS3D01G496100.1
TraesCS4A01G104800.1
TraesCS4B01G199200.1
TraesCS4D01G200200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58220.1	TraesCS3A01G245000.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3A01G490100.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3B01G275000.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3B01G550900.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3B01G551200.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3D01G246500.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3D01G496100.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS1A01G421400.1	AT5G58220.1	21798944
AT5G58220.1	TraesCS2B01G044200.1	AT5G58220.1	21798944
AT5G58220.1	TraesCS4A01G104800.1	AT5G58220.1	21798944
AT5G58220.1	TraesCS4B01G199200.1	AT5G58220.1	21798944
AT5G58220.1	TraesCS4D01G200200.1	AT5G58220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G199200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	36.96	15.36
VIT_09s0018g01180.t01	Wine grape	cytosol, nucleus, peroxisome	30.43	12.73
PGSC0003DMT400004592	Potato	cytoskeleton, cytosol, peroxisome	29.71	12.24
Solyc01g080940.2.1	Tomato	cytoskeleton, cytosol, peroxisome	29.71	12.24
KRH66244	Soybean	cytosol, nucleus, peroxisome	27.54	11.45
KRH07309	Soybean	cytosol, nucleus, peroxisome	26.81	11.14
Bra020380.1-P	Field mustard	cytosol, nucleus, peroxisome	25.36	10.94
CDY02804	Canola	cytosol	24.64	10.73
CDY32716	Canola	cytosol	24.64	10.62
AT5G58220.1	Thale cress	cytosol	23.91	10.19

Protein Annotations

EnsemblPlants:TraesCS2B01G044200.1	EnsemblPlantsGene:TraesCS2B01G044200	Gene3D:1.10.3330.10	InterPro:IPR036778	InterPro:OHCU_decarboxylase	InterPro:OHCU_decarboxylase_sf
InterPro:Transthyretin/HIU_hydrolase_d	KEGG:00230+4.1.1.97	PANTHER:PTHR10395	PANTHER:PTHR10395:SF7	PFAM:PF09349	SEG:seg
SUPFAM:SSF158694	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:21662548..21663647

Molecular Weight (calculated)

16001.0 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.622

Length

138 amino acids

Sequence
(BLAST)

001: MYLTSPTFLW RRPYMKMRRR LEGIGRRRPG DDEVVPSSHR KPSVFFLPPF SRLAAAMERG HTLATDGGLQ HRIEAISHHY RWSKEEHSAV LSTATDSTTQ
101: ELSEWNAKYC DKFGFVFMIC VSRRTAPEVH KSEATTWS

Best Arabidopsis Sequence Match ( AT5G58220.1 )
(BLAST)

001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS

Arabidopsis Description

TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.