Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G104800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 80.95 | 40.96 |
| Os03t0390700-01 | Rice | plasma membrane | 76.79 | 38.62 |
| OQU92482 | Sorghum | cytosol | 76.19 | 38.55 |
| GSMUA_Achr5P13880_001 | Banana | cytosol | 40.48 | 38.2 |
| Zm00001d047217_P001 | Maize | cytosol | 75.0 | 36.84 |
| GSMUA_Achr5P13910_001 | Banana | peroxisome | 61.31 | 31.02 |
| KRH66244 | Soybean | cytosol, nucleus, peroxisome | 56.55 | 28.61 |
| VIT_09s0018g01180.t01 | Wine grape | cytosol, nucleus, peroxisome | 55.95 | 28.48 |
| KRH07309 | Soybean | cytosol, nucleus, peroxisome | 55.36 | 28.01 |
| Solyc01g080940.2.1 | Tomato | cytoskeleton, cytosol, peroxisome | 55.36 | 27.76 |
| Bra020380.1-P | Field mustard | cytosol, nucleus, peroxisome | 52.38 | 27.5 |
| PGSC0003DMT400004592 | Potato | cytoskeleton, cytosol, peroxisome | 54.76 | 27.46 |
| CDY32716 | Canola | cytosol | 51.79 | 27.19 |
| CDY02804 | Canola | cytosol | 50.6 | 26.81 |
| AT5G58220.1 | Thale cress | cytosol | 47.02 | 24.38 |
| HORVU4Hr1G057640.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G421400.1 | EnsemblPlantsGene:TraesCS1A01G421400 | Gene3D:1.10.3330.10 | InterPro:IPR036778 | InterPro:OHCU_decarboxylase | InterPro:OHCU_decarboxylase_sf |
| InterPro:Transthyretin/HIU_hydrolase_d | KEGG:00230+4.1.1.97 | PANTHER:PTHR10395 | PANTHER:PTHR10395:SF7 | PFAM:PF09349 | SEG:seg |
| SUPFAM:SSF158694 | MapMan:6.1.4.7 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:577635720..577637276
Molecular Weight (calculated)
18485.2 Da
IEP (calculated)
9.179
GRAVY (calculated)
-0.030
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLTVEDVL RVNGSRRFAV ALAAASPFGS LADALLAARR IWRNEVDVPG WLEAFAANPP LGTTSLSISK WSKEEQSVAR STATHSTAQD LSEWNAKYRD
101: KFGFVFLICA TGRTAPEVLA ELKRRYANRL IVELEIAAAE ELKITELRLA KLFSPETAAP RLQLLANQ
101: KFGFVFLICA TGRTAPEVLA ELKRRYANRL IVELEIAAAE ELKITELRLA KLFSPETAAP RLQLLANQ
001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ AAGVEVHLEV WSGTTGPSFV
201: HGGGGVWSSV GTSATDRDGR SGPLMDLVDA LNPGTYRISF DTAKYSPGCF FPYVSIVFQV TESQKWEHFH VPLLLAPFSF STYRGS
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ AAGVEVHLEV WSGTTGPSFV
201: HGGGGVWSSV GTSATDRDGR SGPLMDLVDA LNPGTYRISF DTAKYSPGCF FPYVSIVFQV TESQKWEHFH VPLLLAPFSF STYRGS
Arabidopsis Description
TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.