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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 4
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plasma membrane
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0718300-01
Os03t0390700-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G58220.1 Os01t0718300-01 AT4G39400.1 15319482
AT5G58220.1 Os03t0390700-01 AT5G58220.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU92482 Sorghum cytosol 85.33 85.84
TraesCS4B01G199200.1 Wheat cytosol, mitochondrion, peroxisome, plastid 84.13 84.64
TraesCS4A01G104800.1 Wheat cytosol, mitochondrion, peroxisome, plastid 83.83 84.34
TraesCS4D01G200200.1 Wheat cytosol, mitochondrion, peroxisome, plastid 83.53 84.04
HORVU4Hr1G057650.8 Barley cytosol, mitochondrion, peroxisome, plastid 83.53 84.04
TraesCS1A01G421400.1 Wheat plastid 38.62 76.79
Zm00001d047217_P001 Maize cytosol 77.54 75.73
GSMUA_Achr5P13910_001 Banana peroxisome 66.17 66.57
VIT_09s0018g01180.t01 Wine grape cytosol, nucleus, peroxisome 61.68 62.42
HORVU4Hr1G057640.1 Barley cytosol 11.68 61.9
Solyc01g080940.2.1 Tomato cytoskeleton, cytosol, peroxisome 58.08 57.91
PGSC0003DMT400004592 Potato cytoskeleton, cytosol, peroxisome 57.78 57.61
KRH07309 Soybean cytosol, nucleus, peroxisome 56.59 56.93
Bra020380.1-P Field mustard cytosol, nucleus, peroxisome 53.89 56.25
KRH66244 Soybean cytosol, nucleus, peroxisome 55.69 56.02
CDY32716 Canola cytosol 53.59 55.94
CDY02804 Canola cytosol 52.69 55.52
GSMUA_Achr5P13880_001 Banana cytosol 28.44 53.37
AT5G58220.1 Thale cress cytosol 49.7 51.23
Protein Annotations
KEGG:00230+3.5.2.17KEGG:00230+3.5.2.17+4.1.1.97KEGG:00230+4.1.1.97Gene3D:1.10.3330.10Gene3D:2.60.40.180EntrezGene:4333020
MapMan:6.1.4.7ProteinID:AAR06357.1EMBL:AB110190ProteinID:ABF96360.1EMBL:AK103600ProteinID:BAF12191.1
ProteinID:BAS84519.1ProteinID:EEE59183.1GO:GO:0001560GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0005829GO:GO:0005886
GO:GO:0006139GO:GO:0006144GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009605GO:GO:0009719GO:GO:0009742GO:GO:0009987GO:GO:0009991
GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016049GO:GO:0016787GO:GO:0019428
GO:GO:0031234GO:GO:0033971GO:GO:0040007GO:GO:0051289GO:GO:0051997InterPro:HIU_hydrol/OHCU_decarb
InterPro:Hydroxyisourate_hydrolaseInterPro:IPR036778InterPro:IPR036817InterPro:OHCU_decarboxylaseInterPro:OHCU_decarboxylase_sfEnsemblPlantsGene:Os03g0390700
EnsemblPlants:Os03t0390700-01PFAM:PF00576PFAM:PF09349PIRSF:PIRSF037178PRINTS:PR00189ScanProsite:PS00768
PANTHER:PTHR10395PANTHER:PTHR10395:SF7UniProt:Q7XXQ9SUPFAM:SSF158694SUPFAM:SSF49472TIGRFAMs:TIGR02962
InterPro:Thyroxine_BSInterPro:Transthyretin/HIU_hydrolaseInterPro:Transthyretin/HIU_hydrolase_dInterPro:Transthyretin/HIU_hydrolase_sfUniParc:UPI00001AB0CARefSeq:XP_015630533.1
SEG:seg:::::
Description
Similar to Transthyretin-like protein. (Os03t0390700-01)
Coordinates
chr3:+:15648919..15652111
Molecular Weight (calculated)
36364.8 Da
IEP (calculated)
8.254
GRAVY (calculated)
-0.277
Length
334 amino acids
Sequence
(BLAST)
001: MATTRGQLPV EDVLRVNGSR RFAAALAAAS PFASLADALL AARRIWLNEV DVNGWLEAFA AHPAIGTTSS SAPKWCKEEQ SAALATATDS TAQELADWNA
101: RYREKFGFVF MICASGRTAP EVLAELKRRY ENRPIVELEI AAQEELKITE LRLAKLFASE PVAPPSSTVG GPTSQSDKAA DRMRIIGAHL GSHTQHSANK
201: APEITGSSNR TRPPITTHVL DVARGSPASG IEVHLEMWKD ASTPPSFNNK DFNGWATLGS SVTNNDGRSG QLMDIVNNVA PGFYRISFNT SKYAPSGFFP
301: YVSIIFEIKK NQTTEHFHVP LLHSPFSFTT YRGS
Best Arabidopsis Sequence Match ( AT5G58220.1 )
(BLAST)
001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS
Arabidopsis Description
TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.