Factsheet for TraesCS4A01G104800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

mitochondrion 3
peroxisome 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G421400.1
TraesCS2B01G044200.1
TraesCS3A01G245000.1
TraesCS3A01G490100.1
TraesCS3B01G275000.1
TraesCS3B01G550900.1
TraesCS3B01G551200.1
TraesCS3D01G246500.1
TraesCS3D01G496100.1
TraesCS4A01G104800.1
TraesCS4B01G199200.1
TraesCS4D01G200200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58220.1	TraesCS3A01G245000.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3A01G490100.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3B01G275000.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3B01G550900.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3B01G551200.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3D01G246500.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS3D01G496100.1	AT4G39400.1	15319482
AT5G58220.1	TraesCS1A01G421400.1	AT5G58220.1	21798944
AT5G58220.1	TraesCS2B01G044200.1	AT5G58220.1	21798944
AT5G58220.1	TraesCS4A01G104800.1	AT5G58220.1	21798944
AT5G58220.1	TraesCS4B01G199200.1	AT5G58220.1	21798944
AT5G58220.1	TraesCS4D01G200200.1	AT5G58220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G199200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	96.69	96.69
TraesCS4D01G200200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	96.08	96.08
HORVU4Hr1G057650.8	Barley	cytosol, mitochondrion, peroxisome, plastid	93.67	93.67
OQU92482	Sorghum	cytosol	84.34	84.34
Os03t0390700-01	Rice	plasma membrane	84.34	83.83
TraesCS1A01G421400.1	Wheat	plastid	40.96	80.95
Zm00001d047217_P001	Maize	cytosol	76.81	74.56
GSMUA_Achr5P13910_001	Banana	peroxisome	63.25	63.25
VIT_09s0018g01180.t01	Wine grape	cytosol, nucleus, peroxisome	60.24	60.61
Solyc01g080940.2.1	Tomato	cytoskeleton, cytosol, peroxisome	58.43	57.91
PGSC0003DMT400004592	Potato	cytoskeleton, cytosol, peroxisome	57.53	57.01
KRH07309	Soybean	cytosol, nucleus, peroxisome	56.93	56.93
KRH66244	Soybean	cytosol, nucleus, peroxisome	56.93	56.93
Bra020380.1-P	Field mustard	cytosol, nucleus, peroxisome	54.22	56.25
CDY02804	Canola	cytosol	53.31	55.84
CDY32716	Canola	cytosol	53.61	55.62
GSMUA_Achr5P13880_001	Banana	cytosol	27.71	51.69
AT5G58220.1	Thale cress	cytosol	49.7	50.93

Protein Annotations

KEGG:00230+3.5.2.17	KEGG:00230+4.1.1.97	Gene3D:1.10.3330.10	Gene3D:2.60.40.180	MapMan:6.1.4.7	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0006144	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0033971	InterPro:Hydroxyisourate_hydrolase	InterPro:IPR036778	InterPro:IPR036817	InterPro:OHCU_decarboxylase
InterPro:OHCU_decarboxylase_sf	PFAM:PF00576	PFAM:PF09349	PRINTS:PR00189	ScanProsite:PS00768	PANTHER:PTHR10395
PANTHER:PTHR10395:SF7	SUPFAM:SSF158694	SUPFAM:SSF49472	TIGRFAMs:TIGR02962	InterPro:Thyroxine_BS	EnsemblPlantsGene:TraesCS4A01G104800
EnsemblPlants:TraesCS4A01G104800.1	InterPro:Transthyretin/HIU_hydrolase	InterPro:Transthyretin/HIU_hydrolase_d	InterPro:Transthyretin/HIU_hydrolase_sf	TIGR:cd05822	SEG:seg

Description

No Description!

Coordinates

chr4A:-:118635496..118639831

Molecular Weight (calculated)

36185.6 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.216

Length

332 amino acids

Sequence
(BLAST)

001: MATLRPLTVE DVLRVNGSRR FAAALAAASP FDSLADALLA ARCIWLNEVD VTGWLEAFAA HPPIGTTSSS VSKWSKEEQS AALSTATDST AQELSEWNAK
101: YREKFGFVFM ICASGRTAPE VLAELKRRYA NRPIVELEAA AEEELKISEL RLTKLFSAET AAPPTSGENH ISQPDKAADR MRIIGAHLGA LSQLSANKAP
201: EITGSSNRTR PPITTHVLDT ALGSPAAGIE VHLEMWKDAS STPAFDNKEF KGWTTLGTSV TNNDGRSGQL MDIVDNVAPG FYRISFNTSK YAPSGFFPYV
301: SIIFEIKRSQ TTEHFHVPLL HSPFSFTTYR GS

Best Arabidopsis Sequence Match ( AT5G58220.1 )
(BLAST)

001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS

Arabidopsis Description

TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.