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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • peroxisome 1
  • plasma membrane 1
  • plastid 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plasma membrane, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EES03532
OQU86764
OQU92482

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G58220.1 EES03532 AT4G39400.1 15319482
AT5G58220.1 OQU86764 AT4G39400.1 15319482
AT5G58220.1 OQU92482 AT5G58220.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0390700-01 Rice plasma membrane 85.84 85.33
TraesCS4B01G199200.1 Wheat cytosol, mitochondrion, peroxisome, plastid 84.34 84.34
TraesCS4A01G104800.1 Wheat cytosol, mitochondrion, peroxisome, plastid 84.34 84.34
Zm00001d047217_P001 Maize cytosol 86.75 84.21
TraesCS4D01G200200.1 Wheat cytosol, mitochondrion, peroxisome, plastid 83.73 83.73
HORVU4Hr1G057650.8 Barley cytosol, mitochondrion, peroxisome, plastid 83.43 83.43
TraesCS1A01G421400.1 Wheat plastid 38.55 76.19
GSMUA_Achr5P13910_001 Banana peroxisome 65.66 65.66
VIT_09s0018g01180.t01 Wine grape cytosol, nucleus, peroxisome 60.54 60.91
Solyc01g080940.2.1 Tomato cytoskeleton, cytosol, peroxisome 59.04 58.51
PGSC0003DMT400004592 Potato cytoskeleton, cytosol, peroxisome 58.43 57.91
CDY02804 Canola cytosol 54.82 57.41
HORVU4Hr1G057640.1 Barley cytosol 10.84 57.14
KRH66244 Soybean cytosol, nucleus, peroxisome 56.93 56.93
KRH07309 Soybean cytosol, nucleus, peroxisome 56.93 56.93
Bra020380.1-P Field mustard cytosol, nucleus, peroxisome 54.52 56.56
CDY32716 Canola cytosol 54.22 56.25
AT5G58220.1 Thale cress cytosol 51.81 53.09
GSMUA_Achr5P13880_001 Banana cytosol 28.01 52.25
Protein Annotations
KEGG:00230+3.5.2.17KEGG:00230+4.1.1.97Gene3D:1.10.3330.10Gene3D:2.60.40.180MapMan:6.1.4.7EntrezGene:8080457
UniProt:A0A1Z5S965GO:GO:0001560GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0005829GO:GO:0005886GO:GO:0006139
GO:GO:0006144GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009605GO:GO:0009719GO:GO:0009742GO:GO:0009987GO:GO:0009991GO:GO:0016020
GO:GO:0016043GO:GO:0016049GO:GO:0016787GO:GO:0019428GO:GO:0031234GO:GO:0033971
GO:GO:0040007GO:GO:0051289GO:GO:0051997InterPro:Hydroxyisourate_hydrolaseInterPro:IPR036778InterPro:IPR036817
InterPro:OHCU_decarboxylaseInterPro:OHCU_decarboxylase_sfEnsemblPlants:OQU92482ProteinID:OQU92482ProteinID:OQU92482.1PFAM:PF00576
PFAM:PF09349PRINTS:PR00189ScanProsite:PS00768PANTHER:PTHR10395PANTHER:PTHR10395:SF7EnsemblPlantsGene:SORBI_3001G350400
SUPFAM:SSF158694SUPFAM:SSF49472TIGRFAMs:TIGR02962InterPro:Thyroxine_BSInterPro:Transthyretin/HIU_hydrolaseInterPro:Transthyretin/HIU_hydrolase_d
InterPro:Transthyretin/HIU_hydrolase_sfUniParc:UPI0001A832EFRefSeq:XP_002467759.1SEG:seg::
Description
hypothetical protein
Coordinates
chr1:-:64009621..64012931
Molecular Weight (calculated)
36149.5 Da
IEP (calculated)
6.638
GRAVY (calculated)
-0.239
Length
332 amino acids
Sequence
(BLAST)
001: MAAPMPLSAE DVLRVNGSRR FAAAMAAASP FASLADALLA ARRIWLDEVD VSGWLEAFAA HPAIGTTSSS VSKWSKEEQS AALSTATDST AQELAEWNAR
101: YREKFGFVFM ICASRRTAPE VLAELKRRYT NRPIVELEAA AQEELKITEL RLAKLFSSEP TVPSTTTEGP ATQSDKAADR IRIIGAHLGA LPQPCANKAP
201: EITGSSNRSR PPITTHVLDT ARGSPASGIE VHLEMWKDSS APPSFSNKDF SGWATLGYSV TNNDGRSGQL MDIVDNIAPG FYRISFNTSK YSPAGFFPYV
301: SIIFEIKENQ TAEHFHVPLL HSPFSFTTYR GS
Best Arabidopsis Sequence Match ( AT5G58220.1 )
(BLAST)
001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS
Arabidopsis Description
TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.