CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07309
KRH53813
KRH64131
KRH66244

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58220.1	KRH53813	AT4G39400.1	15319482
AT5G58220.1	KRH64131	AT4G39400.1	15319482
AT5G58220.1	KRH07309	AT5G58220.1	21798944
AT5G58220.1	KRH66244	AT5G58220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66244	Soybean	cytosol, nucleus, peroxisome	90.66	90.66
VIT_09s0018g01180.t01	Wine grape	cytosol, nucleus, peroxisome	69.28	69.7
Solyc01g080940.2.1	Tomato	cytoskeleton, cytosol, peroxisome	68.98	68.36
PGSC0003DMT400004592	Potato	cytoskeleton, cytosol, peroxisome	68.37	67.76
CDY02804	Canola	cytosol	59.04	61.83
Bra020380.1-P	Field mustard	cytosol, nucleus, peroxisome	57.83	60.0
CDY32716	Canola	cytosol	57.83	60.0
GSMUA_Achr5P13910_001	Banana	peroxisome	59.64	59.64
AT5G58220.1	Thale cress	cytosol	58.13	59.57
OQU92482	Sorghum	cytosol	56.93	56.93
TraesCS4A01G104800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.93	56.93
TraesCS4D01G200200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.63	56.63
HORVU4Hr1G057650.8	Barley	cytosol, mitochondrion, peroxisome, plastid	56.63	56.63
TraesCS4B01G199200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.63	56.63
Os03t0390700-01	Rice	plasma membrane	56.93	56.59
TraesCS1A01G421400.1	Wheat	plastid	28.01	55.36
GSMUA_Achr5P13880_001	Banana	cytosol	29.22	54.49
Zm00001d047217_P001	Maize	cytosol	54.52	52.92
HORVU4Hr1G057640.1	Barley	cytosol	9.34	49.21
TraesCS2B01G044200.1	Wheat	mitochondrion	11.14	26.81

Protein Annotations

KEGG:00230+3.5.2.17	KEGG:00230+4.1.1.97	Gene3D:1.10.3330.10	EntrezGene:100788368	Gene3D:2.60.40.180	MapMan:6.1.4.7
EMBL:ACUP02009963	EnsemblPlantsGene:GLYMA_16G080700	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0006144
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033971	InterPro:Hydroxyisourate_hydrolase
UniProt:I1MM35	InterPro:IPR036778	InterPro:IPR036817	EnsemblPlants:KRH07309	ProteinID:KRH07309	ProteinID:KRH07309.1
InterPro:OHCU_decarboxylase	InterPro:OHCU_decarboxylase_sf	PFAM:PF00576	PFAM:PF09349	PRINTS:PR00189	ScanProsite:PS00768
ScanProsite:PS00769	PANTHER:PTHR10395	PANTHER:PTHR10395:SF7	MetaCyc:PWY-5691	MetaCyc:PWY-7394	MetaCyc:PWY-7849
SUPFAM:SSF158694	SUPFAM:SSF49472	TIGRFAMs:TIGR02962	InterPro:Thyroxine_BS	InterPro:Transthyretin/HIU_hydrolase	InterPro:Transthyretin/HIU_hydrolase_d
InterPro:Transthyretin/HIU_hydrolase_sf	InterPro:Transthyretin_CS	UniParc:UPI000233AEF1	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:8578149..8583568

Molecular Weight (calculated)

36414.7 Da

IEP (calculated)

7.254

GRAVY (calculated)

-0.244

Length

332 amino acids

Sequence
(BLAST)

001: MEFSFDEKDF ASCCGSTKFA KEMASASPFR SFQDAVSVAK GVWFNSVDVN GWLQAFSAHP QIGQTHAPSV ASEASAQWSK GEQSTALATA TGSSLQELSE
101: WNARYREKFG FVFLICAAGR STDEILAELK RRYTNRPIVE FEIAAQEQMK ITELRLAKLF SSRENISSSV DKYSAAKKAE EDRISIIGGH VTAASEISTA
201: KLIHHPARTR PPITTHVLDV SQGSPAAGIE VLLEVWRGTQ SRPTFGASGG GSWVFQGSST TDLDGRSGQL LSIVDDVNPG IYRISFNTGK YIPNGFFPYV
301: SLVFEIKESQ KREHFHVPLL LSPFSFSTYR GS

Best Arabidopsis Sequence Match ( AT5G58220.1 )
(BLAST)

001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS

Arabidopsis Description

TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.