Factsheet for GSMUA_Achr5P13880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P05250_001
GSMUA_Achr4P08920_001
GSMUA_Achr5P13880_001
GSMUA_Achr5P13910_001
GSMUA_Achr6P35950_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58220.1	GSMUA_Achr1P05250_001	AT4G39400.1	15319482
AT5G58220.1	GSMUA_Achr4P08920_001	AT4G39400.1	15319482
AT5G58220.1	GSMUA_Achr6P35950_001	AT4G39400.1	15319482
AT5G58220.1	GSMUA_AchrUn_...	AT4G39400.1	15319482
AT5G58220.1	GSMUA_Achr5P13880_001	AT5G58220.1	21798944
AT5G58220.1	GSMUA_Achr5P13910_001	AT5G58220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G421400.1	Wheat	plastid	38.2	40.48
GSMUA_Achr5P13910_001	Banana	peroxisome	72.47	38.86
KRH66244	Soybean	cytosol, nucleus, peroxisome	55.06	29.52
Bra020380.1-P	Field mustard	cytosol, nucleus, peroxisome	52.81	29.38
KRH07309	Soybean	cytosol, nucleus, peroxisome	54.49	29.22
CDY32716	Canola	cytosol	52.25	29.06
Solyc01g080940.2.1	Tomato	cytoskeleton, cytosol, peroxisome	53.93	28.66
VIT_09s0018g01180.t01	Wine grape	cytosol, nucleus, peroxisome	52.81	28.48
Os03t0390700-01	Rice	plasma membrane	53.37	28.44
CDY02804	Canola	cytosol	50.56	28.39
OQU92482	Sorghum	cytosol	52.25	28.01
HORVU4Hr1G057650.8	Barley	cytosol, mitochondrion, peroxisome, plastid	51.69	27.71
TraesCS4A01G104800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	51.69	27.71
TraesCS4B01G199200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	51.69	27.71
TraesCS4D01G200200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	51.69	27.71
PGSC0003DMT400004592	Potato	cytoskeleton, cytosol, peroxisome	51.69	27.46
Zm00001d047217_P001	Maize	cytosol	51.69	26.9
AT5G58220.1	Thale cress	cytosol	46.07	25.31
HORVU4Hr1G057640.1	Barley	cytosol	5.62	15.87

Protein Annotations

EnsemblPlants:GSMUA_Achr5P13880_001	EnsemblPlants:GSMUA_Achr5T13880_001	EnsemblPlantsGene:GSMUA_Achr5G13880_001	Gene3D:1.10.3330.10	InterPro:IPR036778	InterPro:OHCU_decarboxylase
InterPro:OHCU_decarboxylase_sf	InterPro:Transthyretin/HIU_hydrolase_d	KEGG:00230+4.1.1.97	PANTHER:PTHR10395	PANTHER:PTHR10395:SF7	PFAM:PF09349
SUPFAM:SSF158694	UniParc:UPI000296A25F	UniProt:M0SYB7	MapMan:35.1	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G13880_001]

Coordinates

chr5:-:9977992..9982172

Molecular Weight (calculated)

20368.7 Da

IEP (calculated)

9.066

GRAVY (calculated)

-0.023

Length

178 amino acids

Sequence
(BLAST)

001: MTALSCVEED VLRCCGSKRF AKEIVSASPF TNLDHALRSA CDIWFDKELV EWNFRYREKF GFVFLICASG RGTTEILAEL KKRYLNRPIV ELEIAAQEEM
101: KIIELRLARL FNSDAGSNIP VTTRLPVSSP TKYSVNFAFN LCFILTSHVL NLKRKPDSRT LVFPLLHSSF SFKTYRGS

Best Arabidopsis Sequence Match ( AT5G58220.3 )
(BLAST)

001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ AEAKAPKRSR PPITTHVLDV
201: SRGAPAAGVE VHLEVWSGTT GPSFVHGGGG VWSSVGTSAT DRDGRSGPLM DLVDALNPGT YRISFDTAKY SPGCFFPYVS IVFQVTESQK WEHFHVPLLL
301: APFSFSTYRG S

Arabidopsis Description

TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.