Factsheet for GSMUA_Achr6P35950_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P02160_001
GSMUA_Achr1P05250_001
GSMUA_Achr1P15240_001
GSMUA_Achr2P05500_001	plasma membrane
GSMUA_Achr2P14850_001
GSMUA_Achr4P08920_001
GSMUA_Achr4P29650_001
GSMUA_Achr5P11610_001
GSMUA_Achr5P13880_001
GSMUA_Achr5P13910_001
GSMUA_Achr5P19040_001
GSMUA_Achr6P35950_001
GSMUA_Achr7P11620_001
GSMUA_Achr7P17210_001
GSMUA_Achr8P13240_001
GSMUA_Achr9P19060_001	plasma membrane
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39400.1	GSMUA_Achr10P...	AT1G71830.1	16473966
AT4G39400.1	GSMUA_Achr10P...	AT1G71830.1	16473966
AT4G39400.1	GSMUA_Achr2P14850_001	AT1G71830.1	16473966
AT4G39400.1	GSMUA_Achr7P11620_001	AT1G71830.1	16473966
AT4G39400.1	GSMUA_Achr7P17210_001	AT1G71830.1	16473966
AT4G39400.1	GSMUA_AchrUn_...	AT1G71830.1	16473966
AT4G39400.1	GSMUA_Achr2P05500_001	AT3G13380.1	24064770
AT4G39400.1	GSMUA_Achr9P19060_001	AT3G13380.1	24064770
AT4G39400.1	GSMUA_Achr1P15240_001	AT4G00710.1	18653891
AT4G39400.1	GSMUA_Achr11P...	AT4G35230.1	18653891
AT4G39400.1	GSMUA_Achr1P02160_001	AT4G35230.1	18653891
AT4G39400.1	GSMUA_Achr4P29650_001	AT4G35230.1	18653891
AT4G39400.1	GSMUA_Achr5P11610_001	AT4G35230.1	18653891
AT4G39400.1	GSMUA_Achr5P19040_001	AT4G35230.1	18653891
AT4G39400.1	GSMUA_Achr8P13240_001	AT4G35230.1	18653891
AT4G39400.1	GSMUA_Achr1P05250_001	AT4G39400.1	15935775
AT4G39400.1	GSMUA_Achr4P08920_001	AT4G39400.1	15935775
AT4G39400.1	GSMUA_Achr6P35950_001	AT4G39400.1	15935775
AT4G39400.1	GSMUA_AchrUn_...	AT4G39400.1	15935775
AT4G39400.1	GSMUA_Achr1P05250_001	AT4G39400.1	16473966
AT4G39400.1	GSMUA_Achr4P08920_001	AT4G39400.1	16473966
AT4G39400.1	GSMUA_Achr6P35950_001	AT4G39400.1	16473966
AT4G39400.1	GSMUA_AchrUn_...	AT4G39400.1	16473966
AT4G39400.1	GSMUA_Achr5P13880_001	AT5G58220.1	15319482
AT4G39400.1	GSMUA_Achr5P13910_001	AT5G58220.1	15319482

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	plasma membrane	75.5	84.33
GSMUA_Achr1P05250_001	Banana	golgi, plasma membrane	64.59	70.65
GSMUA_Achr4P08920_001	Banana	plasma membrane, vacuole	64.03	65.12
CDY66904	Canola	cytosol, peroxisome, plasma membrane	33.74	63.79
TraesCS3A01G245000.1	Wheat	plasma membrane	68.82	55.03
TraesCS3D01G246500.1	Wheat	plasma membrane	68.82	54.98
Os01t0718300-01	Rice	plasma membrane	65.81	52.72
Zm00001d043634_P001	Maize	plasma membrane	65.37	52.69
HORVU3Hr1G068000.2	Barley	plastid	68.49	52.56
Zm00001d011721_P001	Maize	plasma membrane	65.48	52.41
EES03532	Sorghum	plasma membrane	65.26	52.32
TraesCS3B01G275000.1	Wheat	plasma membrane, plastid	68.82	51.33
HORVU3Hr1G068010.1	Barley	plasma membrane	32.63	50.6
CDY53185	Canola	plasma membrane	58.8	49.16
VIT_07s0031g01850.t01	Wine grape	plasma membrane	65.59	48.88
KRH64131	Soybean	plasma membrane	64.48	48.78
HORVU3Hr1G068020.2	Barley	cytosol	45.43	48.46
KRH53813	Soybean	plasma membrane	63.47	48.14
PGSC0003DMT400050728	Potato	golgi, plasma membrane, vacuole	64.37	47.93
CDX72702	Canola	plasma membrane	60.13	47.83
CDY12143	Canola	plasma membrane	56.79	47.66
Solyc04g051510.1.1	Tomato	golgi, plasma membrane, vacuole	63.81	47.47
CDY41977	Canola	plasma membrane	59.02	47.07
AT4G39400.1	Thale cress	plasma membrane, vacuole	62.25	46.74
Bra010684.1-P	Field mustard	plasma membrane	60.58	46.34
Bra011862.1-P	Field mustard	plasma membrane	60.58	45.56
Bra033615.1-P	Field mustard	plasma membrane	60.58	45.56
CDX90332	Canola	plasma membrane	55.68	45.21
GSMUA_Achr2P05500_001	Banana	plasma membrane	35.97	41.57
GSMUA_Achr9P19060_001	Banana	plasma membrane	35.97	41.09
GSMUA_Achr2P15100_001	Banana	plasma membrane	34.3	40.31
TraesCS3B01G551200.1	Wheat	plasma membrane	46.55	38.7
Zm00001d014769_P001	Maize	cytosol, extracellular, nucleus	12.14	38.11
TraesCS3B01G550900.1	Wheat	plasma membrane	45.88	38.04
TraesCS3D01G496100.1	Wheat	plasma membrane	45.1	37.43
OQU86764	Sorghum	plasma membrane	40.98	37.06
CDY66903	Canola	extracellular	16.82	36.21
TraesCS3A01G490100.1	Wheat	plasma membrane	34.63	34.75
GSMUA_Achr8P00900_001	Banana	plasma membrane	33.52	29.95
GSMUA_Achr3P18780_001	Banana	cytosol	18.15	28.95
GSMUA_Achr5P25270_001	Banana	plasma membrane	26.73	28.4
GSMUA_Achr6P16720_001	Banana	plastid, vacuole	23.5	25.54
GSMUA_Achr10P...	Banana	plasma membrane, vacuole	24.28	24.77
GSMUA_Achr6P23960_001	Banana	cytosol	19.27	24.26

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.30.1490.310	Gene3D:3.30.200.20	Gene3D:3.80.10.10	MapMan:50.2.7	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G35950_001	EnsemblPlants:GSMUA_Achr6P35950_001	EnsemblPlants:GSMUA_Achr6T35950_001	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
UniProt:M0TD38	PFAM:PF00069	PFAM:PF08263	PFAM:PF13855	PRINTS:PR00019	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF220	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI00029681B1	SEG:seg	:	:	:

Description

Putative Systemin receptor SR160 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35950_001]

Coordinates

chr6:-:34051827..34055198

Molecular Weight (calculated)

97269.4 Da

IEP (calculated)

6.505

GRAVY (calculated)

0.035

Length

898 amino acids

Sequence
(BLAST)

001: MRGVELRRRS FLRLACFLSL LVAIRSSDAG DLDLLMSFKT AVANPQLLPS WDALRGPCSF SGVTCGAGGR VVAIALHLSL RAVNLTGDVA GVRCGGRLAE
101: LDLSGNSLQG SIADVASLAA ACSGLKSLNL SGNSVGFDLR WLLSNLGSLR RLDLVGSRLS GGILAITNCS YLQHLDLSYS GLSGVIGDGV FGHCRSLAYL
201: NLSSNHFTGT LPSDLSSCTS LRTLSLSNNN FSGDLGDSIT RMPMLEVLDL SSNRLNYLTG AIPSGLGSLP SLRDLIMWQN LLEAEIPPEL VNLRSLENLI
301: LDNNGLNGSI PAGLVNCTNL NWLSLSSNHL SGTIPPWIGQ LHNLAILKLG NNSFSGPIPP ELGDCKSLVW LDLNNNQLSG SIPPTLAKHG CRGTGNLLEV
401: YKGLTQYTFN NNGSMLFLDL SFNQLTGQIP KELGNMYYLL ILNLGHNFLS GLIPTDLGSL RYVAVLDLSH NALEGPIPSS FSGLAMLAEI DLSNNELNGS
501: IPELGQLATF PRYRYENNSG LCGFPLPSCE DIAGANSSTQ HQKSNRRQAS LAGSVAMGLL FSLFCIFGLI IIAVESKKRQ KKKDSTTKDA LVINLATFEM
601: PLRKLCFADL VEATNGFHND SLIGSGGFGD VYKAQLKDGS VVAIKKLIHV SGQGDREFTA EMETIGRIKH RNLVPLLGYC KVGEERLLVY EYMKFGSLAF
701: LHHNCIPHII HRDMKSSNVL LDENLEARVS DFGMARLMSA VDTHLSVSAL AGTPGYVPPE YYQSFRCTTK GDVYSYGVVL LELLTGRRPT DSMDFGDNNL
801: VGWVKQHSKL RISDVFDPEL LKEDPSLELE LLEHLKIACS CLDDRPLRRP TMLRVMTMFK EIQAGLSMNA TSSAPAASMD GGFYEGDMSL KESKEEKD

Best Arabidopsis Sequence Match ( AT4G39400.1 )
(BLAST)

0001: MKTFSSFFLS VTTLFFFSFF SLSFQASPSQ SLYREIHQLI SFKDVLPDKN LLPDWSSNKN PCTFDGVTCR DDKVTSIDLS SKPLNVGFSA VSSSLLSLTG
0101: LESLFLSNSH INGSVSGFKC SASLTSLDLS RNSLSGPVTT LTSLGSCSGL KFLNVSSNTL DFPGKVSGGL KLNSLEVLDL SANSISGANV VGWVLSDGCG
0201: ELKHLAISGN KISGDVDVSR CVNLEFLDVS SNNFSTGIPF LGDCSALQHL DISGNKLSGD FSRAISTCTE LKLLNISSNQ FVGPIPPLPL KSLQYLSLAE
0301: NKFTGEIPDF LSGACDTLTG LDLSGNHFYG AVPPFFGSCS LLESLALSSN NFSGELPMDT LLKMRGLKVL DLSFNEFSGE LPESLTNLSA SLLTLDLSSN
0401: NFSGPILPNL CQNPKNTLQE LYLQNNGFTG KIPPTLSNCS ELVSLHLSFN YLSGTIPSSL GSLSKLRDLK LWLNMLEGEI PQELMYVKTL ETLILDFNDL
0501: TGEIPSGLSN CTNLNWISLS NNRLTGEIPK WIGRLENLAI LKLSNNSFSG NIPAELGDCR SLIWLDLNTN LFNGTIPAAM FKQSGKIAAN FIAGKRYVYI
0601: KNDGMKKECH GAGNLLEFQG IRSEQLNRLS TRNPCNITSR VYGGHTSPTF DNNGSMMFLD MSYNMLSGYI PKEIGSMPYL FILNLGHNDI SGSIPDEVGD
0701: LRGLNILDLS SNKLDGRIPQ AMSALTMLTE IDLSNNNLSG PIPEMGQFET FPPAKFLNNP GLCGYPLPRC DPSNADGYAH HQRSHGRRPA SLAGSVAMGL
0801: LFSFVCIFGL ILVGREMRKR RRKKEAELEM YAEGHGNSGD RTANNTNWKL TGVKEALSIN LAAFEKPLRK LTFADLLQAT NGFHNDSLIG SGGFGDVYKA
0901: ILKDGSAVAI KKLIHVSGQG DREFMAEMET IGKIKHRNLV PLLGYCKVGD ERLLVYEFMK YGSLEDVLHD PKKAGVKLNW STRRKIAIGS ARGLAFLHHN
1001: CSPHIIHRDM KSSNVLLDEN LEARVSDFGM ARLMSAMDTH LSVSTLAGTP GYVPPEYYQS FRCSTKGDVY SYGVVLLELL TGKRPTDSPD FGDNNLVGWV
1101: KQHAKLRISD VFDPELMKED PALEIELLQH LKVAVACLDD RAWRRPTMVQ VMAMFKEIQA GSGIDSQSTI RSIEDGGFST IEMVDMSIKE VPEGKL

Arabidopsis Description

BRI1Protein BRASSINOSTEROID INSENSITIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:O22476]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.