CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72702
CDX90332
CDY02804
CDY12143
CDY32716
CDY41977
CDY53185
CDY66903
CDY66904

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58220.1	CDX72702	AT4G39400.1	15319482
AT5G58220.1	CDX90332	AT4G39400.1	15319482
AT5G58220.1	CDY12143	AT4G39400.1	15319482
AT5G58220.1	CDY41977	AT4G39400.1	15319482
AT5G58220.1	CDY53185	AT4G39400.1	15319482
AT5G58220.1	CDY66903	AT4G39400.1	15319482
AT5G58220.1	CDY66904	AT4G39400.1	15319482
AT5G58220.1	CDY02804	AT5G58220.1	21798944
AT5G58220.1	CDY32716	AT5G58220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020380.1-P	Field mustard	cytosol, nucleus, peroxisome	98.12	98.12
CDY02804	Canola	cytosol	94.69	95.58
AT5G58220.1	Thale cress	cytosol	79.69	78.7
VIT_09s0018g01180.t01	Wine grape	cytosol, nucleus, peroxisome	61.25	59.39
KRH66244	Soybean	cytosol, nucleus, peroxisome	60.94	58.73
Solyc01g080940.2.1	Tomato	cytoskeleton, cytosol, peroxisome	60.62	57.91
GSMUA_Achr5P13910_001	Banana	peroxisome	60.0	57.83
KRH07309	Soybean	cytosol, nucleus, peroxisome	60.0	57.83
PGSC0003DMT400004592	Potato	cytoskeleton, cytosol, peroxisome	59.69	57.01
TraesCS4D01G200200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.56	54.52
OQU92482	Sorghum	cytosol	56.25	54.22
TraesCS4B01G199200.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	55.94	53.92
TraesCS4A01G104800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	55.62	53.61
Os03t0390700-01	Rice	plasma membrane	55.94	53.59
HORVU4Hr1G057650.8	Barley	cytosol, mitochondrion, peroxisome, plastid	55.0	53.01
GSMUA_Achr5P13880_001	Banana	cytosol	29.06	52.25
TraesCS1A01G421400.1	Wheat	plastid	27.19	51.79
Zm00001d047217_P001	Maize	cytosol	54.69	51.17
HORVU4Hr1G057640.1	Barley	cytosol	9.06	46.03
TraesCS2B01G044200.1	Wheat	mitochondrion	10.62	24.64

Protein Annotations

KEGG:00230+3.5.2.17	KEGG:00230+4.1.1.97	Gene3D:1.10.3330.10	Gene3D:2.60.40.180	MapMan:6.1.4.7	GO:A0A078H4E3
UniProt:A0A078H4E3	EnsemblPlants:CDY32716	ProteinID:CDY32716	ProteinID:CDY32716.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0006144	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0033971	EnsemblPlantsGene:GSBRNA2T00052766001	InterPro:Hydroxyisourate_hydrolase	InterPro:IPR036778	InterPro:IPR036817	InterPro:OHCU_decarboxylase
InterPro:OHCU_decarboxylase_sf	PFAM:PF00576	PFAM:PF09349	PRINTS:PR00189	ScanProsite:PS00768	ScanProsite:PS00769
PANTHER:PTHR10395	PANTHER:PTHR10395:SF7	MetaCyc:PWY-5691	MetaCyc:PWY-7394	SUPFAM:SSF158694	SUPFAM:SSF49472
TIGRFAMs:TIGR02962	InterPro:Thyroxine_BS	InterPro:Transthyretin/HIU_hydrolase	InterPro:Transthyretin/HIU_hydrolase_d	InterPro:Transthyretin/HIU_hydrolase_sf	InterPro:Transthyretin_CS
UniPathway:UPA00394	UniParc:UPI0004EE1E38	:	:	:	:

Description

BnaA02g07780DBnaA02g07780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4E3]

Coordinates

chrLK032298:+:316547..318265

Molecular Weight (calculated)

35365.9 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.271

Length

320 amino acids

Sequence
(BLAST)

001: MAMTTMEIRE EDWKVCCGSS DFAKLMVKAS PFNSLDAAIE SARDIWFNQV NVAAWLEAFA AHPQIGKSPS PSSNSDFARR SVTEQSRAFA TTSASSLEEL
101: AEWNVLYRQQ FGFIFIICAS GRTHAEMLAE LKGRYANRPI VELEIAAKEQ MKITELRMAK LFSEKAKAVS QTESTKPQED RLRILGGHLN VAEAPKRSRP
201: PITTHVLDVS RGAPAAGVEV HLEVWNGTTS PSFGHGARGD WSMVGTSATD KDGRSGPLMD LVEALKPGTY RISFNTGKYC PGGFFPYVSI AFEVTESQKW
301: EHFHVPLLLS PFSFTTYRGS

Best Arabidopsis Sequence Match ( AT5G58220.1 )
(BLAST)

001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS

Arabidopsis Description

TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.