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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • peroxisome 1
  • plasma membrane 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra010684.1-P
Bra011862.1-P
Bra020380.1-P
Bra033615.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G58220.1 Bra010684.1-P AT4G39400.1 15319482
AT5G58220.1 Bra011862.1-P AT4G39400.1 15319482
AT5G58220.1 Bra033615.1-P AT4G39400.1 15319482
AT5G58220.1 Bra020380.1-P AT5G58220.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY32716 Canola cytosol 98.12 98.12
AT5G58220.1 Thale cress cytosol 79.06 78.09
VIT_09s0018g01180.t01 Wine grape cytosol, nucleus, peroxisome 60.94 59.09
KRH66244 Soybean cytosol, nucleus, peroxisome 60.94 58.73
GSMUA_Achr5P13910_001 Banana peroxisome 60.62 58.43
Solyc01g080940.2.1 Tomato cytoskeleton, cytosol, peroxisome 60.94 58.21
KRH07309 Soybean cytosol, nucleus, peroxisome 60.0 57.83
PGSC0003DMT400004592 Potato cytoskeleton, cytosol, peroxisome 60.0 57.31
TraesCS4D01G200200.1 Wheat cytosol, mitochondrion, peroxisome, plastid 57.19 55.12
TraesCS4B01G199200.1 Wheat cytosol, mitochondrion, peroxisome, plastid 56.56 54.52
OQU92482 Sorghum cytosol 56.56 54.52
TraesCS4A01G104800.1 Wheat cytosol, mitochondrion, peroxisome, plastid 56.25 54.22
Os03t0390700-01 Rice plasma membrane 56.25 53.89
HORVU4Hr1G057650.8 Barley cytosol, mitochondrion, peroxisome, plastid 55.62 53.61
GSMUA_Achr5P13880_001 Banana cytosol 29.38 52.81
TraesCS1A01G421400.1 Wheat plastid 27.5 52.38
Zm00001d047217_P001 Maize cytosol 55.0 51.46
HORVU4Hr1G057640.1 Barley cytosol 9.06 46.03
TraesCS2B01G044200.1 Wheat mitochondrion 10.94 25.36
Protein Annotations
KEGG:00230+3.5.2.17KEGG:00230+4.1.1.97Gene3D:1.10.3330.10Gene3D:2.60.40.180MapMan:6.1.4.7EnsemblPlantsGene:Bra020380
EnsemblPlants:Bra020380.1EnsemblPlants:Bra020380.1-PGO:GO:0001560GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0005829GO:GO:0005886
GO:GO:0006139GO:GO:0006144GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009605GO:GO:0009719GO:GO:0009742GO:GO:0009987GO:GO:0009991
GO:GO:0016020GO:GO:0016043GO:GO:0016049GO:GO:0016787GO:GO:0019428GO:GO:0031234
GO:GO:0033971GO:GO:0040007GO:GO:0051289GO:GO:0051997InterPro:Hydroxyisourate_hydrolaseInterPro:IPR036778
InterPro:IPR036817UniProt:M4DV37InterPro:OHCU_decarboxylaseInterPro:OHCU_decarboxylase_sfPFAM:PF00576PFAM:PF09349
PRINTS:PR00189ScanProsite:PS00768ScanProsite:PS00769PANTHER:PTHR10395PANTHER:PTHR10395:SF7SUPFAM:SSF158694
SUPFAM:SSF49472TIGRFAMs:TIGR02962InterPro:Thyroxine_BSInterPro:Transthyretin/HIU_hydrolaseInterPro:Transthyretin/HIU_hydrolase_dInterPro:Transthyretin/HIU_hydrolase_sf
InterPro:Transthyretin_CSUniParc:UPI0002543067::::
Description
AT5G58220 (E=2e-140) TTL | TTL (Transthyretin-Like protein); steroid binding
Coordinates
chrA02:+:6475234..6476817
Molecular Weight (calculated)
35366.0 Da
IEP (calculated)
7.238
GRAVY (calculated)
-0.258
Length
320 amino acids
Sequence
(BLAST)
001: MAMTTMEIRE EDWKVCCGSS DFAKLMVKAS PFNSLDAAIE SARDIWFNQV NVAAWLEAFA AHPLIGKSPS PSSNSDFARR SVTEQSRAFA TTSASALEEL
101: TEWNALYRER FGFIFIICAS GRTHAEMLAE LKGRYANRPI VELEIAAKEQ MKITELRMAK LFSEKAKAVS QTESTKPQED RLRILGGHLN VAEAPKRSRP
201: PITTHVLDVS RGAPAAGVEV HLEVWNGTTS PSFGHGARGD WSMVGTSATD KDGRSGPLMD LVEALKPGTY RISFNTGKYC PGGFFPYVSI AFEVTESQKW
301: EHFHVPLLLS PFSFTTYRGS
Best Arabidopsis Sequence Match ( AT5G58220.1 )
(BLAST)
001: MAMEIGEDEW KVCCGSSEFA KQMSTSGPLT SQEAIYTARD IWFNQVNVTD WLEAFSAHPQ IGNTPSPSIN SDFARRSVSE QSTAFATTSA SALQELAEWN
101: VLYKKKFGFI FIICASGRTH AEMLHALKER YENRPIVELE IAAMEQMKIT ELRMAKLFSD KAKVISETDS SSSPVSTKPQ DRLRIIGGHL NVAAEAKAPK
201: RSRPPITTHV LDVSRGAPAA GVEVHLEVWS GTTGPSFVHG GGGVWSSVGT SATDRDGRSG PLMDLVDALN PGTYRISFDT AKYSPGCFFP YVSIVFQVTE
301: SQKWEHFHVP LLLAPFSFST YRGS
Arabidopsis Description
TTLUric acid degradation bifunctional protein TTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LVM5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.