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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:endoplasmic reticulum
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69430
CDX70708
CDX72702
CDX85492
CDX90332
CDY07991
CDY12143
CDY16992
CDY38092
CDY38095
CDY41977
CDY53185
CDY66903
CDY66904

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G13790.1 CDX72702 AT4G39400.1 17600708
AT2G13790.1 CDX90332 AT4G39400.1 17600708
AT2G13790.1 CDY12143 AT4G39400.1 17600708
AT2G13790.1 CDY41977 AT4G39400.1 17600708
AT2G13790.1 CDY53185 AT4G39400.1 17600708
AT2G13790.1 CDY66903 AT4G39400.1 17600708
AT2G13790.1 CDY66904 AT4G39400.1 17600708
AT2G13790.1 CDX69430 AT5G48380.1 19616764
AT2G13790.1 CDX70708 AT5G48380.1 19616764
AT2G13790.1 CDX85492 AT5G48380.1 19616764
AT2G13790.1 CDY07991 AT5G48380.1 19616764
AT2G13790.1 CDY16992 AT5G48380.1 19616764
AT2G13790.1 CDY38092 AT5G48380.1 19616764
AT2G13790.1 CDY38095 AT5G48380.1 19616764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra032128.1-P Field mustard cytosol 80.23 100.0
Bra032125.1-P Field mustard plasma membrane 80.4 90.88
CDX89615 Canola plasma membrane 72.82 72.46
CDX93126 Canola plasma membrane 72.65 72.3
CDY48450 Canola plasma membrane 72.65 72.06
AT2G13800.3 Thale cress plasma membrane 70.68 71.38
AT2G13790.1 Thale cress plasma membrane 72.49 70.97
CDX72403 Canola plasma membrane 70.18 70.65
CDY46116 Canola plasma membrane 70.02 70.48
CDX68975 Canola plasma membrane 70.84 69.92
CDX75351 Canola plasma membrane 70.68 69.64
CDY45042 Canola plasma membrane 70.18 69.61
PGSC0003DMT400032797 Potato cytosol, plasma membrane, plastid 58.65 68.73
CDX71165 Canola plasma membrane 69.85 68.61
PGSC0003DMT400045607 Potato cytosol, plasma membrane, plastid 58.98 68.19
Solyc10g047140.1.1 Tomato plasma membrane 67.55 66.67
Solyc01g104970.2.1 Tomato plasma membrane 67.22 66.23
VIT_12s0055g01160.t01 Wine grape plasma membrane 65.9 65.57
VIT_12s0055g01280.t01 Wine grape plasma membrane 55.35 65.5
GSMUA_Achr7P17210_001 Banana cytosol 53.05 65.31
TraesCS6D01G186900.2 Wheat plasma membrane 64.91 65.23
TraesCS6A01G203600.2 Wheat cytosol 64.91 64.7
KRH58311 Soybean plasma membrane 65.9 64.41
Os08t0174700-01 Rice plasma membrane 66.06 64.26
CDY36679 Canola plasma membrane 65.4 63.93
EES07030 Sorghum plasma membrane 65.9 63.9
GSMUA_Achr2P14850_001 Banana plastid 65.73 63.84
Zm00001d016928_P010 Maize plasma membrane 65.73 63.74
GSMUA_Achr10P... Banana plasma membrane 65.4 63.42
KXG24562 Sorghum plasma membrane 65.9 63.39
CDX72833 Canola plasma membrane 65.24 63.36
TraesCS7D01G291200.3 Wheat plasma membrane 64.74 63.28
Os04t0457800-01 Rice plasma membrane 65.4 63.22
CDX96350 Canola plasma membrane 65.07 63.2
TraesCS7A01G293300.3 Wheat plasma membrane 64.58 63.02
Zm00001d050868_P004 Maize plasma membrane 64.58 62.92
TraesCS6B01G223700.3 Wheat plasma membrane 64.91 62.74
HORVU6Hr1G049080.7 Barley plasma membrane 64.91 62.74
CDY28301 Canola plasma membrane 41.02 62.72
TraesCS7B01G182300.1 Wheat plasma membrane 64.25 62.7
TraesCS2A01G343100.1 Wheat mitochondrion, plasma membrane 64.74 62.68
TraesCS2B01G340700.1 Wheat plasma membrane 64.74 62.68
TraesCS2D01G321400.1 Wheat mitochondrion 64.74 62.68
EES12285 Sorghum plasma membrane 64.09 62.54
Zm00001d024430_P002 Maize plasma membrane 65.73 62.54
Zm00001d025580_P001 Maize plasma membrane 63.92 62.38
GSMUA_AchrUn_... Banana plasma membrane 64.42 62.06
GSMUA_Achr7P11620_001 Banana plasma membrane 64.74 61.12
HORVU7Hr1G068990.2 Barley mitochondrion 64.74 58.31
KRH42193 Soybean plasma membrane 58.48 57.63
KRH58312 Soybean plasma membrane 57.66 56.91
Zm00001d049480_P005 Maize plasma membrane 61.61 56.75
HORVU2Hr1G080020.6 Barley cytosol 64.74 55.51
CDX68299 Canola plasma membrane 64.42 55.15
GSMUA_Achr10P... Banana mitochondrion 65.57 54.9
CDY28194 Canola cytosol 27.68 54.55
Os06t0225300-01 Rice plasma membrane 49.09 48.38
CDX85768 Canola plasma membrane 48.6 48.28
CDY40089 Canola plasma membrane 48.6 48.28
CDY55159 Canola extracellular, plasma membrane, vacuole 47.28 47.2
CDY08807 Canola plasma membrane 47.28 47.2
CDY61508 Canola cytosol 39.37 47.14
CDY44608 Canola cytosol 39.21 46.94
CDX69484 Canola plasma membrane 47.94 45.9
CDY61461 Canola golgi, plasma membrane 47.12 45.04
CDX83534 Canola plasma membrane 47.45 45.0
CDY48073 Canola plasma membrane 47.45 45.0
CDY26481 Canola plasma membrane 47.12 44.9
CDY46185 Canola golgi, plasma membrane 46.95 44.81
CDX84436 Canola cytosol 42.01 44.04
CDY41531 Canola cytosol 42.01 44.04
CDY39685 Canola plasma membrane 44.81 42.7
CDY65182 Canola plasma membrane 44.48 42.39
CDX72249 Canola plasma membrane 44.48 42.39
CDX77614 Canola plasma membrane 42.67 42.18
CDY39449 Canola plasma membrane 42.5 41.95
CDX70667 Canola endoplasmic reticulum, golgi 47.12 39.72
CDY39211 Canola plasma membrane 37.73 39.55
CDX68670 Canola plasma membrane 38.72 39.17
CDX78667 Canola golgi, plasma membrane 46.62 39.14
CDX88452 Canola plasma membrane, vacuole 19.28 33.33
CDY52435 Canola plasma membrane, vacuole 19.28 33.33
CDX84346 Canola plasma membrane 30.64 31.85
CDY00321 Canola plasma membrane 30.64 31.85
CDY16762 Canola plasma membrane 30.64 30.9
CDY31708 Canola plasma membrane 29.82 30.83
CDX79610 Canola plasma membrane 30.15 30.81
CDX84187 Canola plasma membrane 29.82 30.73
CDX84610 Canola plasma membrane 29.98 30.64
CDX87267 Canola plasma membrane 30.15 30.45
CDY32113 Canola plasma membrane 29.49 30.44
CDY40456 Canola plasma membrane 29.82 30.32
CDY00320 Canola endoplasmic reticulum 0.66 23.53
CDY67608 Canola cytosol, mitochondrion, nucleus 2.47 18.75
CDX68667 Canola cytosol, mitochondrion, nucleus 2.47 18.75
Protein Annotations
KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:04714+2.7.11.1KEGG:04926+2.7.11.1KEGG:05165+2.7.11.1Gene3D:1.10.510.10
MapMan:11.3.2.1.2MapMan:18.4.1.2Gene3D:3.30.200.20Gene3D:3.80.10.10GO:A0A078HME4UniProt:A0A078HME4
EnsemblPlants:CDY39690ProteinID:CDY39690ProteinID:CDY39690.1GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0004674GO:GO:0004871GO:GO:0005102GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301
GO:GO:0016310GO:GO:0016740GO:GO:0019199GO:GO:0019538GO:GO:0038023EnsemblPlantsGene:GSBRNA2T00068277001
InterPro:IPR000719InterPro:IPR032675InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sfPFAM:PF00069
PFAM:PF08263ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27001PANTHER:PTHR27001:SF1
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSInterPro:SERKSMART:SM00220SUPFAM:SSF52058SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_ASUniParc:UPI0004EE1E2BSEG:seg:::
Description
BnaA04g14070DBnaA04g14070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HME4]
Coordinates
chrLK032454:-:227285..230720
Molecular Weight (calculated)
67828.8 Da
IEP (calculated)
6.012
GRAVY (calculated)
-0.074
Length
607 amino acids
Sequence
(BLAST)
001: MIAVDALTAL RLSLSDPKNV LQSWTWNATD VTPCSWFHVT CNNETTVVRV DLGNANLSGQ LVPQLGQLPN LQYLELFSNN ITRGIPEELG VLTELVSLEL
101: YMNNLSGSIP SSLGNLKKLI YLRLNNNALS GELPRSLTDV LSLQVLDVSN NRLTGDVLLT GSFSQFTAVR FPPCPYFANN NNLRLLPAPP SEVALDLKTV
201: IALSHFLKRF TWLINQGFFP LKKLFNASAA VVIFSGGAIA LAWWLRSRPH DSFFDVIGEE DPEVHLGQLR RFSLRELLVA TNDFSYKNLL GRGGFGKVYK
301: GRLADGSLVA VKRLKEERTK GVELQFQTEV VMISMAVRRN LLRLRGFCMT PTERLLVYPY MANGSVASCL RERPRGNAAL DWAKRKHIAL GAAKGLAYLH
401: DHCDQKIIHR DVKAANILLD EQFEAVVGDF GLAKLMNYND SHVTTDVRGT IGHIAPEYLS TGKSSVKTDV FGYGVMLLEL ITGQKALDLA RLATDDDNML
501: LDWVKEVLKE EKLESLVDAE LEGNYVDKEV EELIEMVLLC TQSSSLKRPS MAEVVRMLEG DGLAEKWEEW QKKEMLTTDF NYPQAYINGF VPESISHIDN
601: DYLSGPR
Best Arabidopsis Sequence Match ( AT2G13790.1 )
(BLAST)
001: MTSSKMEQRS LLCFLYLLLL FNFTLRVAGN AEGDALTQLK NSLSSGDPAN NVLQSWDATL VTPCTWFHVT CNPENKVTRV DLGNAKLSGK LVPELGQLLN
101: LQYLELYSNN ITGEIPEELG DLVELVSLDL YANSISGPIP SSLGKLGKLR FLRLNNNSLS GEIPMTLTSV QLQVLDISNN RLSGDIPVNG SFSLFTPISF
201: ANNSLTDLPE PPPTSTSPTP PPPSGGQMTA AIAGGVAAGA ALLFAVPAIA FAWWLRRKPQ DHFFDVPAEE DPEVHLGQLK RFTLRELLVA TDNFSNKNVL
301: GRGGFGKVYK GRLADGNLVA VKRLKEERTK GGELQFQTEV EMISMAVHRN LLRLRGFCMT PTERLLVYPY MANGSVASCL RERPEGNPAL DWPKRKHIAL
401: GSARGLAYLH DHCDQKIIHR DVKAANILLD EEFEAVVGDF GLAKLMNYND SHVTTAVRGT IGHIAPEYLS TGKSSEKTDV FGYGVMLLEL ITGQKAFDLA
501: RLANDDDIML LDWVKEVLKE KKLESLVDAE LEGKYVETEV EQLIQMALLC TQSSAMERPK MSEVVRMLEG DGLAERWEEW QKEEMPIHDF NYQAYPHAGT
601: DWLIPYSNSL IENDYPSGPR
Arabidopsis Description
SERK4Somatic embryogenesis receptor kinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKG5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.