Factsheet for Os03t0151800-02

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plastid, cytosol, plasma membrane, nucleus

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
extracellular: 24083427
nucleus: 26035336
plastid: 27992503

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0151800-02
Os04t0457800-01
Os06t0225300-01
Os08t0174700-01
Os10t0442600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	Os04t0457800-01	AT1G71830.1	15592873
AT3G09840.1	Os06t0225300-01	AT1G71830.1	15592873
AT3G09840.1	Os08t0174700-01	AT1G71830.1	15592873
AT3G09840.1	Os04t0457800-01	AT1G71830.1	16473966
AT3G09840.1	Os06t0225300-01	AT1G71830.1	16473966
AT3G09840.1	Os08t0174700-01	AT1G71830.1	16473966
AT3G09840.1	Os04t0457800-01	AT1G71830.1	16621602
AT3G09840.1	Os06t0225300-01	AT1G71830.1	16621602
AT3G09840.1	Os08t0174700-01	AT1G71830.1	16621602
AT3G09840.1	Os04t0457800-01	AT1G71830.1	17693538
AT3G09840.1	Os06t0225300-01	AT1G71830.1	17693538
AT3G09840.1	Os08t0174700-01	AT1G71830.1	17693538
AT3G09840.1	Os03t0151800-02	AT3G09840.1	15592873
AT3G09840.1	Os10t0442600-01	AT3G09840.1	15592873
AT3G09840.1	Os03t0151800-02	AT3G09840.1	16621602
AT3G09840.1	Os10t0442600-01	AT3G09840.1	16621602
AT3G09840.1	Os03t0151800-02	AT3G09840.1	17693538
AT3G09840.1	Os10t0442600-01	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027707_P001	Maize	cytosol, plasma membrane	96.79	97.03
EER92840	Sorghum	cytosol	96.54	96.42
EER94171	Sorghum	cytosol	96.29	96.17
HORVU4Hr1G072010.4	Barley	cytosol	95.3	94.6
TraesCS4D01G267800.1	Wheat	cytosol	95.06	94.59
TraesCS4A01G035700.1	Wheat	plastid	94.93	94.46
TraesCS4B01G268400.1	Wheat	golgi	94.81	94.34
TraesCS4B01G268200.1	Wheat	cytosol	95.18	94.25
HORVU4Hr1G071960.2	Barley	cytosol	95.18	94.25
TraesCS4A01G035500.1	Wheat	golgi, nucleus	95.18	94.13
TraesCS4D01G267600.2	Wheat	cytosol	95.18	94.13
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	22.62	93.85
KRH67721	Soybean	endoplasmic reticulum, nucleus	92.21	92.33
HORVU0Hr1G038060.2	Barley	cytosol	60.32	92.25
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	91.97	92.08
VIT_08s0040g01480.t01	Wine grape	cytosol	91.59	91.94
PGSC0003DMT400027096	Potato	cytosol	91.59	91.71
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	91.47	91.58
Solyc06g074980.2.1	Tomato	nucleus	91.1	91.55
CDY11249	Canola	cytosol	90.11	91.35
PGSC0003DMT400031321	Potato	cytosol	90.85	91.3
TraesCS1B01G235400.1	Wheat	cytosol	72.44	91.28
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	91.47	91.25
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	90.98	91.2
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	91.59	91.14
CDX73996	Canola	cytosol	91.1	91.1
Bra001297.1-P	Field mustard	cytosol	91.1	91.1
TraesCS1B01G192400.1	Wheat	cytosol	90.98	91.09
CDY41581	Canola	cytosol	90.98	91.09
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	90.85	91.08
TraesCS1D01G223800.1	Wheat	cytosol	89.99	91.0
AT5G03340.1	Thale cress	cytosol	91.1	90.99
CDY41316	Canola	cytosol, extracellular	91.1	90.99
CDY22207	Canola	cytosol	91.1	90.99
CDY54618	Canola	cytosol	90.85	90.97
Bra034089.1-P	Field mustard	cytosol	90.98	90.86
Bra029795.1-P	Field mustard	cytosol	90.73	90.73
CDY07941	Canola	cytosol	90.73	90.73
PGSC0003DMT400050662	Potato	cytosol	90.23	90.68
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	90.23	90.68
HORVU1Hr1G049910.1	Barley	cytosol	91.22	90.66
TraesCS1A01G222100.1	Wheat	cytosol	89.62	90.62
PGSC0003DMT400055513	Potato	cytosol	90.36	90.58
TraesCS1B01G235300.1	Wheat	cytosol	89.49	90.5
CDY13308	Canola	cytosol	90.61	90.49
AT3G09840.1	Thale cress	cytosol	90.48	90.48
HORVU1Hr1G060370.1	Barley	cytosol	90.23	90.46
TraesCSU01G001000.1	Wheat	cytosol	89.74	90.41
TraesCS1D01G253100.1	Wheat	cytosol	89.37	90.38
Bra003123.1-P	Field mustard	cytosol	90.48	90.37
TraesCS1B01G235500.1	Wheat	cytosol	89.0	90.0
KRG99061	Soybean	cytosol	22.25	90.0
CDX80862	Canola	cytosol, plastid	89.99	89.99
HORVU1Hr1G060340.2	Barley	cytosol	90.23	89.79
TraesCS1A01G190300.1	Wheat	cytosol	89.62	89.73
AT3G53230.1	Thale cress	cytosol	90.36	89.69
KRH30601	Soybean	cytosol	89.12	89.45
Solyc09g008070.2.1	Tomato	cytosol, unclear	89.25	89.36
Bra006978.1-P	Field mustard	cytosol	88.63	88.41
KRG94277	Soybean	cytosol	22.5	87.92
CDX78154	Canola	cytosol	80.22	87.23
CDX73571	Canola	cytosol	79.98	87.08
GSMUA_Achr3P00260_001	Banana	cytosol	52.04	86.27
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	76.76	85.77
VIT_06s0061g00340.t01	Wine grape	cytosol	79.11	83.66
CDX67563	Canola	cytosol	88.26	81.23
Bra005733.1-P	Field mustard	cytosol	91.1	66.76
KRH45638	Soybean	cytosol	26.08	65.73
Os08t0413000-00	Rice	mitochondrion	65.51	58.63
Os05t0376200-00	Rice	cytosol	19.65	40.66
Os04t0498800-01	Rice	cytosol	27.56	38.58
Os02t0784700-00	Rice	cytosol	8.16	35.11
Os02t0199900-01	Rice	nucleus, plasma membrane	16.69	33.75
Os06t0109400-01	Rice	cytosol	31.64	33.25
Os06t0607800-01	Rice	nucleus	16.44	33.17
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	17.31	32.86
Os04t0284600-01	Rice	cytosol	13.72	31.09
Os02t0325100-01	Rice	plastid	15.7	30.31
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	15.7	29.6
Os06t0600100-01	Rice	plasma membrane	15.33	29.31
Os02t0205300-01	Rice	cytosol	15.33	29.25
Os02t0803700-01	Rice	cytosol, nucleus, plastid	15.45	29.14
Os03t0298400-01	Rice	plasma membrane	15.95	28.67
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	15.82	28.57
Os09t0560200-01	Rice	cytosol, mitochondrion	14.96	27.01
Os04t0617600-01	Rice	cytosol	26.33	22.66
Os08t0556550-01	Rice	cytosol	2.97	22.43
Os11t0220400-01	Rice	mitochondrion	6.43	11.11
Os06t0600301-00	Rice	plasma membrane	1.24	4.42
Os08t0556400-01	Rice	endoplasmic reticulum, golgi, plasma membrane	0.37	0.43

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	EntrezGene:4331645
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	ProteinID:ABF94017.1	EMBL:AK098874	EMBL:AK098980	EMBL:AK099712
EMBL:AK099889	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	ProteinID:BAF10901.1	ProteinID:BAS82332.1
ProteinID:BAS82333.1	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	ProteinID:EAZ25611.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0009987
GO:GO:0016787	GO:GO:0051301	EnsemblPlantsGene:Os03g0151800	EnsemblPlants:Os03t0151800-02	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	UniProt:Q10RP0
SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585
TIGRFAMs:TIGR01243	UniParc:UPI0000DB44B8	RefSeq:XP_015631157.1	SEG:seg	:	:

Description

PREMATURE SENESCENCE AND DEATH 128Similar to Cell division control protein 48 homolog A (AtCDC48a). (Os03t0151800-02);Hypothetical conserved gene. (Os03t0151800-03)

Coordinates

chr3:-:2852295..2856681

Molecular Weight (calculated)

89749.1 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.372

Length

809 amino acids

Sequence
(BLAST)

001: MASQGEPSSS SDPKGKKDFS TAILERKKSP NRLVVDEATN DDNSVIGMHP DTMEKLQLFR GDTVLLKGKK RKDTICIVLA DDTCEEPKIR MNKVVRKNLR
101: VRLGDVVSVH QCPDVKYGKR VHILPIDDTV EGITGNLFDA FLKPYFLEAY RPLRKGDLFL VRGGMRSVEF KVIETDPAEY CIVAPDTEIF CDGEPIKRED
201: EERLDEVGYD DVGGVRKQMA QIRELVELPL RHPQLFKSIG VKPPKGILLY GPPGSGKTLI ARAVANETGA FFFLINGPEI MSKLAGESES NLRKAFEEAE
301: KNAPSIIFID EIDSIAPKRE KTHGEVERRI VSQLLTLMDG LKARSHVIVM GATNRPNSID PALRRFGRFD REIDIGVPDE VGRLEVLRIH TKNMKLAEDV
401: DLEHIAKDTH GYVGADLAAL CTEAALQCIR EKMDIIDLED ETIDAEILNS MAVTNDHFKT ALGTSNPSAL RETVVEVPNV SWEDIGGLEN VKRELQETVQ
501: YPVEHPEKFE KFGMSPSKGV LFYGPPGCGK TLLAKAIANE CQANFISVKG PELLTMWFGE SEANVREIFD KARQSAPCVL FFDELDSIAT QRGSSVGDAG
601: GAADRVLNQL LTEMDGMNAK KTVFIIGATN RPDIIDPALL RPGRLDQLIY IPLPDDQSRL QIFKACLRKS PVAKDVDLNA LAKYTQGFSG ADITEICQRA
701: CKYAIRENIE KDIEMEKRRK DNPEAMEEDE VDDIAEIKAA HFEESMKYAR RSVSDADIRK YQAFAQTLQQ SRGFGTEFRF ADQPASGAGA AADPFASAAA
801: AADDDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.