Factsheet for Os06t0192600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018309_P003	Maize	cytosol	100.0	100.0
Os02t0784700-00	Rice	cytosol	44.13	100.0
EES01223	Sorghum	cytosol	99.77	99.77
TraesCS7D01G157200.1	Wheat	cytosol	98.83	98.83
TraesCS7B01G060900.1	Wheat	golgi	98.83	98.83
TraesCS7A01G156800.1	Wheat	cytosol	98.83	98.83
GSMUA_Achr8P16830_001	Banana	cytosol	97.89	98.12
GSMUA_AchrUn_...	Banana	cytosol	97.89	98.12
Solyc03g123730.2.1	Tomato	nucleus	97.89	97.43
PGSC0003DMT400023656	Potato	cytosol	97.89	97.43
VIT_09s0002g00170.t01	Wine grape	cytosol	97.18	97.18
KRH69005	Soybean	nucleus	97.18	97.18
PGSC0003DMT400012446	Potato	cytosol	97.42	96.74
HORVU7Hr1G032070.1	Barley	cytosol	98.36	94.37
Os02t0205300-01	Rice	cytosol	44.84	45.05
Os06t0600100-01	Rice	plasma membrane	43.66	43.97
Os02t0199900-01	Rice	nucleus, plasma membrane	38.5	41.0
Os06t0607800-01	Rice	nucleus	38.03	40.4
Os02t0803700-01	Rice	cytosol, nucleus, plastid	39.91	39.63
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	39.67	39.39
Os04t0284600-01	Rice	cytosol	31.69	37.82
Os03t0298400-01	Rice	plasma membrane	39.44	37.33
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	39.2	37.28
Os02t0325100-01	Rice	plastid	36.62	37.23
Os09t0560200-01	Rice	cytosol, mitochondrion	33.33	31.7
Os05t0376200-00	Rice	cytosol	25.35	27.62
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	10.8	23.59
Os04t0498800-01	Rice	cytosol	29.34	21.63
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	32.86	17.31
Os06t0109400-01	Rice	cytosol	27.46	15.19
Os08t0413000-00	Rice	mitochondrion	30.28	14.27
Os04t0617600-01	Rice	cytosol	26.76	12.13
Os08t0556550-01	Rice	cytosol	2.58	10.28
Os11t0220400-01	Rice	mitochondrion	1.41	1.28
Os06t0600301-00	Rice	plasma membrane	0.47	0.88
Os08t0556400-01	Rice	endoplasmic reticulum, golgi, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:4330943
EntrezGene:4340376	InterPro:AAA+_ATPase	EMBL:AB033535	EMBL:AB070252	EMBL:AK061876	EMBL:AK070538
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:BAD19299.1	ProteinID:BAD35266.1	ProteinID:BAD35822.1	ProteinID:BAF18951.1
ProteinID:BAS81260.1	ProteinID:BAS96586.1	ncoils:Coil	ProteinID:EAZ24854.1	ProteinID:EAZ36112.1	GO:GO:0000166
GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:Os06g0192600	EnsemblPlants:Os06t0192600-01
InterPro:P-loop_NTPase	UniProt:P0DKJ9	UniProt:P0DKK0	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073
PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000013237B	RefSeq:XP_015627290.1
RefSeq:XP_015644004.1	:	:	:	:	:

Description

19S REGULATORY PARTICLE ATPASE SUBUNIT 1A26S proteasome regulatory particle triple-A ATPase subunit1 (26S protease regulatory subunit 7). (Os06t0192600-01)

Coordinates

chr6:+:4667492..4670888

Molecular Weight (calculated)

47684.9 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.406

Length

426 amino acids

Sequence
(BLAST)

001: MAPEPEDDIM NEKNPRPLDE DDIALLKTYG LGPYSTSIKK VEKEIKEMAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTD
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LEGRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.