Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 5
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
18022940
nucleus: 23777608 plasma membrane: 27800704 plastid: 27992503 plasma membrane: 28056797 |
msms PMID:
18022940
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0803700-01 | |
| Os06t0173100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43010.1 | Os02t0803700-01 | AT3G05530.1 | 21798944 |
| AT5G43010.1 | Os06t0173100-01 | AT3G05530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06471 | Sorghum | cytosol | 98.5 | 98.5 |
| Zm00001d053649_P002 | Maize | cytosol, mitochondrion | 98.25 | 98.25 |
| Zm00001d015788_P001 | Maize | plasma membrane | 98.0 | 98.0 |
| TraesCS6D01G149500.1 | Wheat | cytosol | 87.25 | 96.94 |
| TraesCS6B01G188500.1 | Wheat | cytosol | 96.5 | 96.5 |
| TraesCS6A01G162700.2 | Wheat | cytosol, golgi | 96.25 | 96.25 |
| Os06t0607800-01 | Rice | nucleus | 95.0 | 94.76 |
| KRH51796 | Soybean | cytosol | 93.0 | 93.47 |
| KRH61120 | Soybean | endoplasmic reticulum | 93.0 | 93.47 |
| KRH05868 | Soybean | cytosol, nucleus | 92.75 | 92.98 |
| KRH15139 | Soybean | cytosol, endoplasmic reticulum, nucleus | 92.5 | 92.73 |
| VIT_18s0001g13090.t01 | Wine grape | cytosol | 92.25 | 92.71 |
| GSMUA_AchrUn_... | Banana | cytosol | 92.5 | 92.27 |
| GSMUA_Achr4P03720_001 | Banana | cytosol | 91.75 | 92.21 |
| VIT_03s0038g04350.t01 | Wine grape | cytosol | 91.75 | 91.98 |
| Solyc01g109940.2.1 | Tomato | nucleus | 91.25 | 91.71 |
| PGSC0003DMT400079514 | Potato | cytosol | 91.0 | 91.46 |
| AT1G45000.1 | Thale cress | cytosol | 91.0 | 91.23 |
| HORVU6Hr1G032570.5 | Barley | cytosol | 92.75 | 90.71 |
| AT5G43010.1 | Thale cress | cytosol | 90.25 | 90.48 |
| CDY22373 | Canola | cytosol | 90.25 | 90.48 |
| CDX71534 | Canola | cytosol | 90.25 | 90.48 |
| Bra033655.1-P | Field mustard | cytosol | 90.25 | 90.48 |
| CDY02428 | Canola | cytosol, extracellular | 90.0 | 90.23 |
| Bra035338.1-P | Field mustard | cytosol | 90.0 | 90.23 |
| CDY25226 | Canola | cytosol | 89.75 | 89.97 |
| GSMUA_Achr7P17620_001 | Banana | cytosol | 91.75 | 89.51 |
| Solyc10g054040.1.1 | Tomato | cytosol, unclear | 83.25 | 83.46 |
| CDY20370 | Canola | cytosol | 44.75 | 66.54 |
| KRH51488 | Soybean | mitochondrion | 67.75 | 64.07 |
| CDY39032 | Canola | cytosol | 38.25 | 60.96 |
| KRH00031 | Soybean | plastid | 51.5 | 59.71 |
| CDY39033 | Canola | cytosol | 59.5 | 58.62 |
| CDY20371 | Canola | cytosol, plastid | 59.0 | 53.64 |
| Os02t0784700-00 | Rice | cytosol | 23.5 | 50.0 |
| Os06t0600100-01 | Rice | plasma membrane | 42.5 | 40.19 |
| Os02t0205300-01 | Rice | cytosol | 42.25 | 39.86 |
| Os04t0284600-01 | Rice | cytosol | 35.25 | 39.5 |
| Os06t0192600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 41.0 | 38.5 |
| Os02t0325100-01 | Rice | plastid | 40.0 | 38.19 |
| Bra008198.1-P | Field mustard | cytosol | 59.5 | 37.9 |
| Os02t0803700-01 | Rice | cytosol, nucleus, plastid | 40.25 | 37.53 |
| Os06t0173100-01 | Rice | cytosol, nucleus, plasma membrane | 40.0 | 37.3 |
| Os03t0298400-01 | Rice | plasma membrane | 41.5 | 36.89 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 41.0 | 36.61 |
| Os09t0560200-01 | Rice | cytosol, mitochondrion | 33.25 | 29.69 |
| Os05t0376200-00 | Rice | cytosol | 25.25 | 25.83 |
| Os10t0442600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 11.5 | 23.59 |
| Os04t0498800-01 | Rice | cytosol | 31.0 | 21.45 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 33.75 | 16.69 |
| Os08t0556550-01 | Rice | cytosol | 4.25 | 15.89 |
| Os06t0109400-01 | Rice | cytosol | 30.0 | 15.58 |
| Os08t0413000-00 | Rice | mitochondrion | 32.0 | 14.16 |
| Os04t0617600-01 | Rice | cytosol | 27.25 | 11.6 |
| Os06t0600301-00 | Rice | plasma membrane | 0.5 | 0.88 |
| Os11t0220400-01 | Rice | mitochondrion | 1.0 | 0.85 |
| Os08t0556400-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.4 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | EntrezGene:4328642 |
| InterPro:AAA+_ATPase | EMBL:AB033536 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ProteinID:BAD15843.1 | ProteinID:BAD25481.1 |
| ProteinID:BAF08132.1 | ProteinID:BAS77504.1 | ProteinID:BAS77505.1 | ncoils:Coil | ProteinID:EAZ22124.1 | GO:GO:0000166 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0017025 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0030433 | GO:GO:0031595 | GO:GO:0031597 | GO:GO:0036402 | GO:GO:0045899 |
| GO:GO:1901800 | EnsemblPlantsGene:Os02g0199900 | EnsemblPlants:Os02t0199900-01 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 |
| InterPro:PSMC6 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF59 | UniProt:Q9FXT8 | SMART:SM00382 | SUPFAM:SSF52540 |
| TIGRFAMs:TIGR01242 | UniParc:UPI000009EE95 | RefSeq:XP_015624666.1 | SEG:seg | : | : |
Description
19S REGULATORY PARTICLE ATPASE SUBUNIT 4ASimilar to 26S proteasome regulatory complex subunit p42D. (Os02t0199900-01);Similar to 26S protease regulatory subunit S10B. (Os02t0199900-02);Similar to 26S protease regulatory subunit S10B. (Os02t0199900-03)
Coordinates
chr2:-:5595400..5600848
Molecular Weight (calculated)
44588.9 Da
IEP (calculated)
7.541
GRAVY (calculated)
-0.333
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGEDAAAA RRRASVTEYR KKLLNCRELE SRVSTVRENL KNAKKDFTKT EDDLKSLQSV GQIIGEVLRP LDNERFIVKA SSGPRYVVGC RSKVDKEKLT
101: SGTRVVLDMT TLTIMRTLPR EVDPVVYNML HEDPGNVSYS AVGGLSDQIR ELRESIELPL MNPELFLRVG IKPPKGVLLY GPPGTGKTLL ARAIASNIDA
201: NFLKIVSSAI IDKYIGESAR LIREMFGYAR DHQPCIIFMD EIDAIGGRRF SEGTSADREI QRTLMELLNQ LDGFDELGKV KMIMATNRPD VLDPALLRPG
301: RLDRKIEIPL PNEQARMEVL KIHAAGIAKH GEIDYEAVVK LAEGFNGADL RNVCTEAGMA AIRAERDYVV HEDFMKAVRK LNDAKKLESS AHYSADFGKE
101: SGTRVVLDMT TLTIMRTLPR EVDPVVYNML HEDPGNVSYS AVGGLSDQIR ELRESIELPL MNPELFLRVG IKPPKGVLLY GPPGTGKTLL ARAIASNIDA
201: NFLKIVSSAI IDKYIGESAR LIREMFGYAR DHQPCIIFMD EIDAIGGRRF SEGTSADREI QRTLMELLNQ LDGFDELGKV KMIMATNRPD VLDPALLRPG
301: RLDRKIEIPL PNEQARMEVL KIHAAGIAKH GEIDYEAVVK LAEGFNGADL RNVCTEAGMA AIRAERDYVV HEDFMKAVRK LNDAKKLESS AHYSADFGKE
001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.