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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 3
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 21107622
nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 21107622 doi
N Ahsan, T Nakamura, S Komatsu
National Institute of Crop Science, 2-1-18 Kannondai, Tsukuba, 305-8518, Japan.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG96790
KRH68501

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G45000.1 KRG96790 AT1G09100.1 21798944
AT1G45000.1 KRH68501 AT1G09100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH51796 Soybean cytosol 100.0 100.0
KRH05868 Soybean cytosol, nucleus 98.49 98.25
KRH15139 Soybean cytosol, endoplasmic reticulum, nucleus 98.24 98.0
VIT_18s0001g13090.t01 Wine grape cytosol 96.23 96.23
GSMUA_AchrUn_... Banana cytosol 96.48 95.76
Bra035338.1-P Field mustard cytosol 94.22 93.98
CDY02428 Canola cytosol, extracellular 94.22 93.98
CDY25226 Canola cytosol 94.22 93.98
AT5G43010.1 Thale cress cytosol 93.97 93.73
AT1G45000.1 Thale cress cytosol 93.97 93.73
CDY22373 Canola cytosol 93.97 93.73
CDX71534 Canola cytosol 93.97 93.73
Bra033655.1-P Field mustard cytosol 93.97 93.73
GSMUA_Achr4P03720_001 Banana cytosol 93.47 93.47
TraesCS6D01G149500.1 Wheat cytosol 84.42 93.33
Os02t0199900-01 Rice nucleus, plasma membrane 93.47 93.0
GSMUA_Achr7P17620_001 Banana cytosol 95.73 92.93
Zm00001d015788_P001 Maize plasma membrane 93.22 92.75
Zm00001d053649_P002 Maize cytosol, mitochondrion 93.22 92.75
EES06471 Sorghum cytosol 93.22 92.75
TraesCS6A01G162700.2 Wheat cytosol, golgi 92.71 92.25
TraesCS6B01G188500.1 Wheat cytosol 92.71 92.25
TraesCS7A01G378600.1 Wheat cytosol 91.96 91.5
TraesCS7D01G375500.1 Wheat cytosol 91.96 91.5
TraesCS7B01G280400.1 Wheat cytosol, unclear 91.96 91.5
Zm00001d046539_P002 Maize cytosol, mitochondrion 91.21 91.21
EER88627 Sorghum cytosol 90.95 90.95
Os06t0607800-01 Rice nucleus 91.46 90.77
HORVU6Hr1G032570.5 Barley cytosol 89.2 86.8
HORVU7Hr1G090380.3 Barley cytosol 91.96 83.94
TraesCS7D01G532000.1 Wheat cytosol 77.64 77.64
TraesCS7B01G468900.1 Wheat cytosol 76.63 76.63
TraesCS7A01G545700.1 Wheat cytosol 76.63 76.63
HORVU7Hr1G119300.13 Barley cytosol 77.39 76.62
KRH51488 Soybean mitochondrion 69.85 65.72
KRH00031 Soybean plastid 52.01 60.0
KRH46990 Soybean nucleus 43.97 41.87
KRH44668 Soybean cytosol, mitochondrion, nucleus 43.97 41.87
KRH45565 Soybean endoplasmic reticulum 20.1 39.22
KRH69005 Soybean nucleus 41.46 38.73
KRH06311 Soybean cytosol 41.46 38.73
KRG97280 Soybean cytosol, nucleus 41.46 38.73
KRH47728 Soybean cytosol, nucleus 41.46 38.73
KRH32292 Soybean cytosol, nucleus 42.46 38.15
KRH19693 Soybean cytosol 42.46 38.15
KRH06953 Soybean cytosol 25.88 38.15
KRH30674 Soybean cytosol, nucleus 39.45 38.01
KRG95799 Soybean cytosol, nucleus 42.21 37.67
KRH67524 Soybean nucleus 42.21 37.67
KRG92899 Soybean cytosol, nucleus 39.7 37.35
KRH33891 Soybean endoplasmic reticulum, nucleus 39.7 37.35
KRG98107 Soybean cytosol 38.94 36.73
KRH30673 Soybean cytosol, nucleus 38.94 36.64
KRH68501 Soybean nucleus 38.69 36.24
KRG96790 Soybean mitochondrion 29.4 35.24
KRG99061 Soybean cytosol 15.33 30.5
KRG94277 Soybean cytosol 13.32 25.6
KRH45638 Soybean cytosol 15.58 19.31
KRH70928 Soybean cytosol 27.39 17.99
KRG96011 Soybean endoplasmic reticulum, mitochondrion, nucleus 34.42 16.96
KRH67721 Soybean endoplasmic reticulum, nucleus 34.42 16.96
KRH19916 Soybean endoplasmic reticulum, mitochondrion 34.42 16.89
KRH32530 Soybean endoplasmic reticulum, mitochondrion 34.42 16.85
KRH63585 Soybean endoplasmic reticulum 34.42 16.83
KRH54357 Soybean cytosol, endoplasmic reticulum, mitochondrion 34.42 16.83
KRH22853 Soybean cytosol, endoplasmic reticulum, mitochondrion 33.92 16.73
KRH25081 Soybean cytosol, endoplasmic reticulum, mitochondrion 30.4 16.71
KRH26511 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 33.67 16.6
KRH30601 Soybean cytosol 33.17 16.38
KRH44049 Soybean nucleus 31.16 15.68
KRH10420 Soybean mitochondrion 18.84 15.15
KRH66707 Soybean plastid 31.41 11.95
KRG96401 Soybean mitochondrion 27.14 11.75
KRH68139 Soybean cytosol 17.59 10.45
KRH50491 Soybean cytosol 26.88 9.47
KRG95054 Soybean plastid 17.59 9.08
Protein Annotations
Gene3D:1.10.8.60EntrezGene:100788475EntrezGene:100794489MapMan:19.2.6.2.1.4Gene3D:2.40.50.140InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300UniProt:A0A0R4J305InterPro:AAA+_ATPaseEMBL:ACUP02002156EMBL:ACUP02003392InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_corencoils:CoilEnsemblPlantsGene:GLYMA_04G029400GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0016787GO:GO:0019538GO:GO:0030163
ProteinID:KRH51796.1EnsemblPlants:KRH61120ProteinID:KRH61120ProteinID:KRH61120.1InterPro:P-loop_NTPasePFAM:PF00004
ScanProsite:PS00674PANTHER:PTHR23073PANTHER:PTHR23073:SF58SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242
UniParc:UPI000189D0C4:::::
Description
hypothetical protein
Coordinates
chr4:+:2378504..2382290
Molecular Weight (calculated)
44582.1 Da
IEP (calculated)
8.422
GRAVY (calculated)
-0.353
Length
398 amino acids
Sequence
(BLAST)
001: MAEAEDAVRR RNAVAEYRKK LLQHKELESR VRSVRENLRA SKKEFNKTED DLKSLQSVGQ IIGEVLRPLD NERLIVKASS GPRYVVGCRS KVDKEKLTSG
101: TRVVLDMTTL TIMRALPREV DPVVYNMLHE DPGNISYSAV GGLSDQIREL RESIELPLMN PELFLRVGIK PPKGVLLYGP PGTGKTLLAR AIASNIDANF
201: LKVVSSAIID KYIGESARLI REMFGYARDH QPCIIFMDEI DAIGGRRFSE GTSADREIQR TLMELLNQLD GFDQLGKVKM IMATNRPDVL DPALLRPGRL
301: DRKIEIPLPN EQSRMEILKI HAAGIAKHGE IDYEAVVKLA EGFNGADLRN VCTEAGMAAI RAERDYVIHE DFMKAVRKLN EAKKLESSAH YSADFGKD
Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)
001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.