CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56690.1	KRG89812	AT3G56800.1	11346951
AT3G56690.1	KRG94975	AT3G56800.1	11346951
AT3G56690.1	KRH18664	AT3G56800.1	11346951

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66707	Soybean	plastid	91.05	67.11
VIT_08s0040g00910.t01	Wine grape	cytosol	59.01	42.97
Solyc10g078320.1.1	Tomato	nucleus	52.92	41.34
CDX72118	Canola	plastid	48.77	39.83
AT3G56690.1	Thale cress	cytosol, plastid	50.58	38.16
Bra007262.1-P	Field mustard	plastid	47.99	37.76
GSMUA_Achr6P29120_001	Banana	cytosol	29.18	37.5
CDY56774	Canola	plastid	49.16	37.23
EES09632	Sorghum	cytosol, plastid	43.45	33.91
Zm00001d049140_P006	Maize	cytosol, plastid	43.58	33.43
PGSC0003DMT400018483	Potato	cytosol	17.64	33.17
TraesCS1B01G089700.1	Wheat	cytosol, plastid	42.15	33.13
HORVU1Hr1G015310.16	Barley	cytosol, plastid	42.28	32.44
TraesCS1D01G073600.1	Wheat	cytosol, plastid	42.28	32.44
TraesCS1A01G071300.1	Wheat	cytosol, plastid	42.15	32.34
TraesCS4A01G204700.1	Wheat	cytosol, plastid	42.15	32.31
TraesCS4B01G108300.1	Wheat	plastid	41.89	32.3
HORVU4Hr1G016200.10	Barley	cytosol, plastid	41.63	31.91
TraesCS4D01G105500.2	Wheat	cytosol, plastid	41.63	31.91
KRH63585	Soybean	endoplasmic reticulum	25.03	23.71
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	25.03	23.71
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	24.77	23.67
KRH67721	Soybean	endoplasmic reticulum, nucleus	24.77	23.64
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	22.18	23.62
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	24.64	23.54
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	24.64	23.51
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	24.64	23.43
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	24.64	23.37
KRH30601	Soybean	cytosol	24.25	23.2
KRH70928	Soybean	cytosol	17.64	22.44
KRH44049	Soybean	nucleus	22.44	21.87
KRH10420	Soybean	mitochondrion	12.84	20.0
KRH61120	Soybean	endoplasmic reticulum	9.08	17.59
KRH51796	Soybean	cytosol	9.08	17.59
KRH05868	Soybean	cytosol, nucleus	9.08	17.54
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	9.08	17.54
KRG97280	Soybean	cytosol, nucleus	9.21	16.67
KRH06311	Soybean	cytosol	9.21	16.67
KRH47728	Soybean	cytosol, nucleus	9.21	16.67
KRH69005	Soybean	nucleus	9.21	16.67
KRG96401	Soybean	mitochondrion	19.46	16.32
KRH68139	Soybean	cytosol	13.88	15.97
KRH68501	Soybean	nucleus	8.69	15.76
KRH45565	Soybean	endoplasmic reticulum	4.15	15.69
KRG92899	Soybean	cytosol, nucleus	8.56	15.6
KRH33891	Soybean	endoplasmic reticulum, nucleus	8.56	15.6
KRG95799	Soybean	cytosol, nucleus	8.95	15.47
KRH67524	Soybean	nucleus	8.95	15.47
KRH32292	Soybean	cytosol, nucleus	8.82	15.35
KRH19693	Soybean	cytosol	8.82	15.35
KRG98107	Soybean	cytosol	7.91	14.46
KRH51488	Soybean	mitochondrion	7.91	14.42
KRH30673	Soybean	cytosol, nucleus	7.91	14.42
KRH30674	Soybean	cytosol, nucleus	7.65	14.29
KRH46990	Soybean	nucleus	7.52	13.88
KRH44668	Soybean	cytosol, mitochondrion, nucleus	7.39	13.64
KRH50491	Soybean	cytosol	18.42	12.57
KRG99061	Soybean	cytosol	2.98	11.5
KRH45638	Soybean	cytosol	4.54	10.9
KRG96790	Soybean	mitochondrion	4.67	10.84
KRG94277	Soybean	cytosol	2.85	10.63
KRH00031	Soybean	plastid	3.89	8.7
KRH06953	Soybean	cytosol	1.82	5.19

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0EXN2	InterPro:AAA+_ATPase	EMBL:ACUP02012075
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:GLYMA_19G127100	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	EnsemblPlants:KRG95054	ProteinID:KRG95054	ProteinID:KRG95054.1	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF27	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0006EDE06E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:38570233..38576738

Molecular Weight (calculated)

82537.8 Da

IEP (calculated)

5.156

GRAVY (calculated)

-0.112

Length

771 amino acids

Sequence
(BLAST)

001: MPSNSKQKKK QSKLLQQSSL SSNAATTPSK TLQPSELASL CEEASRKFPS LIAKSAFIAE LAQVDDTVPV SNRIWLSAPS MLSLSLPPGS TVSVSIPSSG
101: EKISQLHSFP LASLANECEK LYGLESSKAL DDYAGNYLVL ATVFPSSKVL KNGVRLSSNL YHAMGCPALG TSVFVHPISS AANGINEQHS TGNSCLSIYN
201: CKELYLQLVP SKNGLPLKFN NFPSLGVSKV KFHVQSENDI VASPATPSNG SKFSNACGMS SPLFDNSASS LPNQNSQSLN SFDVSLALGN ESSKELLLTG
301: NLVNVPMLSE LCFFQVIGAM KQPVTKSDHY PSNGNGDLYP EDSDIADSGN QAFTVNDETK VFLSLPSNAA SEEPIQRDIP CVKLESKDII SSSVSDALSS
401: FGLRTTRGVL LHGPPGTGKT SLAQLCAHEV GVKIFPINGP EIVTHYYGES EQQLHEVFDS AIQAAPAVVF IDELDAIAPA RKDGGEELSQ RLVATLLNLM
501: DGISRSEGLL VIAATNRPDH IEPALRRPGR FDKEIEIGVP SPDQRSDILL TLLSEMDHTL SEFQIEHLGT ATHGFVGADL AALCNEAALI CLRHYANFKK
601: TYGSCSDYIT EQPALMNSAT NSRDHSGDAI SSVSDMSVAS SRVLPSSSLA VTRGKESDGV SVSDRVMSQL LVELDGLHQR VNVTVIAATN RPDKIDPALL
701: RPGRFDRLLY VGPPNEVDRE EIFRIHLCKI PCDSDVSLKE LARLTDGCTG ADISLICREA AVAAIEVCLS T

Best Arabidopsis Sequence Match ( AT3G09840.1 )
(BLAST)

001: MSTPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWN DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKAALRKSPI AKDVDIGALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFEN SAGSGATTGV ADPFATSAAA
801: AGDDDDLYN

Arabidopsis Description

CDC48AAT3G09840 protein [Source:UniProtKB/TrEMBL;Acc:B9DI55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.