CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
plasma membrane 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95799	Soybean	cytosol, nucleus	62.25	28.48
KRH19693	Soybean	cytosol	61.76	28.44
KRH32292	Soybean	cytosol, nucleus	61.76	28.44
KRH67524	Soybean	nucleus	61.76	28.25
KRH61120	Soybean	endoplasmic reticulum	39.22	20.1
KRH51796	Soybean	cytosol	39.22	20.1
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	39.22	20.05
KRH05868	Soybean	cytosol, nucleus	39.22	20.05
KRH30674	Soybean	cytosol, nucleus	40.2	19.85
KRH44668	Soybean	cytosol, mitochondrion, nucleus	40.2	19.62
KRH46990	Soybean	nucleus	40.2	19.62
KRG98107	Soybean	cytosol	40.2	19.43
KRH30673	Soybean	cytosol, nucleus	40.2	19.39
KRH00031	Soybean	plastid	31.86	18.84
KRG96790	Soybean	mitochondrion	30.39	18.67
KRG92899	Soybean	cytosol, nucleus	37.25	17.97
KRH33891	Soybean	endoplasmic reticulum, nucleus	37.25	17.97
KRH68501	Soybean	nucleus	37.25	17.88
KRH51488	Soybean	mitochondrion	36.76	17.73
KRH47728	Soybean	cytosol, nucleus	35.78	17.14
KRH06311	Soybean	cytosol	35.78	17.14
KRG97280	Soybean	cytosol, nucleus	35.78	17.14
KRH69005	Soybean	nucleus	35.78	17.14
KRH06953	Soybean	cytosol	22.06	16.67
KRG99061	Soybean	cytosol	14.71	15.0
KRG94277	Soybean	cytosol	11.76	11.59
KRH45638	Soybean	cytosol	17.65	11.21
KRH70928	Soybean	cytosol	22.55	7.59
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	28.43	7.13
KRH63585	Soybean	endoplasmic reticulum	28.43	7.13
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	27.94	7.06
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	27.94	7.06
KRH67721	Soybean	endoplasmic reticulum, nucleus	27.94	7.05
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	27.94	7.05
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	25.0	7.04
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	27.94	7.03
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	27.94	7.01
KRH44049	Soybean	nucleus	26.96	6.95
KRH30601	Soybean	cytosol	27.45	6.95
KRH10420	Soybean	mitochondrion	16.67	6.87
KRG96401	Soybean	mitochondrion	26.96	5.98
KRH66707	Soybean	plastid	27.94	5.45
KRH68139	Soybean	cytosol	14.71	4.48
KRG95054	Soybean	plastid	15.69	4.15
KRH50491	Soybean	cytosol	22.55	4.07

Protein Annotations

InterPro:26S_subunit_4	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02005261	InterPro:ATPase_AAA_core	EnsemblPlantsGene:GLYMA_08G280400
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538
GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800
UniProt:K7L9E4	EnsemblPlants:KRH45565	ProteinID:KRH45565	ProteinID:KRH45565.1	InterPro:P-loop_NTPase	PFAM:PF00004
PANTHER:PTHR23073	PANTHER:PTHR23073:SF24	SUPFAM:SSF52540	UniParc:UPI00029481E7	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:38082253..38084759

Molecular Weight (calculated)

23102.0 Da

IEP (calculated)

4.612

GRAVY (calculated)

-0.071

Length

204 amino acids

Sequence
(BLAST)

001: MCRSWTLDEC RSCSSSSVRW LLGMRGEESL VPAPASRFIE ELEARLPREE ECWSSTMLRF TMKFSVVGLL QDEVDQMVSV MKVEKAPLES YVDIGGLDAQ
101: IQEIKEAIEL PLTHLELYED IRIKLPKGVI LYGEPGTGKM LLAKLCIFWD VHSSGEREIQ RTMLELLNQL DGFDSRGDVK VILATNRIES LDPAILVGYS
201: HHSI

Best Arabidopsis Sequence Match ( AT2G20140.1 )
(BLAST)

001: MGQGPSGGLN RQGDRKPDGG EKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLAED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHV DFKKAKEKVM FKKKEGVPEG LYM

Arabidopsis Description

RPT2BRPT2b [Source:UniProtKB/TrEMBL;Acc:A0A178VM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.