CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98107	Soybean	cytosol	98.58	98.82
VIT_06s0004g08220.t01	Wine grape	cytosol	94.56	95.69
HORVU2Hr1G107280.1	Barley	cytosol	83.45	95.41
Bra020378.1-P	Field mustard	cytosol	91.02	95.3
CDY02806	Canola	cytosol	91.02	95.3
CDY32714	Canola	cytosol	91.02	95.3
CDY58566	Canola	cytosol	91.02	95.3
KRH30674	Soybean	cytosol, nucleus	92.91	95.16
Bra002662.1-P	Field mustard	cytosol	90.78	95.05
CDY43865	Canola	cytosol	90.78	95.05
CDY32995	Canola	cytosol, extracellular	90.78	95.05
CDX88666	Canola	cytosol	90.78	95.05
Bra006775.1-P	Field mustard	cytosol	87.71	94.88
AT5G58290.1	Thale cress	cytosol	90.78	94.12
HORVU2Hr1G014000.1	Barley	cytosol	87.23	90.0
HORVU3Hr1G067470.2	Barley	cytosol	48.23	89.87
TraesCS2D01G083900.1	Wheat	golgi	87.71	89.4
TraesCS2A01G086400.1	Wheat	cytosol	87.71	89.4
TraesCS2D01G476000.1	Wheat	cytosol	87.94	89.21
TraesCS2B01G499600.1	Wheat	cytosol	87.94	89.21
TraesCS2B01G100400.1	Wheat	cytosol, plastid	87.47	89.16
Os02t0325100-01	Rice	plastid	88.18	89.02
KXG39890	Sorghum	cytosol	87.94	88.57
TraesCS2A01G475900.1	Wheat	cytosol	87.94	87.12
Zm00001d050616_P002	Maize	plastid	87.71	85.48
EER91182	Sorghum	cytosol	81.09	81.67
GSMUA_Achr7P21960_001	Banana	cytosol	91.02	79.55
Zm00001d015886_P002	Maize	cytosol	75.89	59.23
KRH19693	Soybean	cytosol	44.44	42.44
KRH32292	Soybean	cytosol, nucleus	44.44	42.44
KRH67524	Soybean	nucleus	44.68	42.38
KRG95799	Soybean	cytosol, nucleus	44.44	42.15
KRH45565	Soybean	endoplasmic reticulum	19.39	40.2
KRH61120	Soybean	endoplasmic reticulum	36.64	38.94
KRH51796	Soybean	cytosol	36.64	38.94
KRH05868	Soybean	cytosol, nucleus	36.64	38.85
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	36.64	38.85
KRH44668	Soybean	cytosol, mitochondrion, nucleus	38.3	38.76
KRH46990	Soybean	nucleus	38.3	38.76
KRH33891	Soybean	endoplasmic reticulum, nucleus	37.59	37.59
KRG92899	Soybean	cytosol, nucleus	37.59	37.59
KRH06953	Soybean	cytosol	23.64	37.04
KRH06311	Soybean	cytosol	37.12	36.85
KRG97280	Soybean	cytosol, nucleus	37.12	36.85
KRH47728	Soybean	cytosol, nucleus	37.12	36.85
KRH69005	Soybean	nucleus	37.12	36.85
KRH68501	Soybean	nucleus	35.93	35.76
KRG96790	Soybean	mitochondrion	26.24	33.43
KRH51488	Soybean	mitochondrion	33.33	33.33
KRH00031	Soybean	plastid	24.35	29.86
KRG99061	Soybean	cytosol	13.0	27.5
KRG94277	Soybean	cytosol	12.06	24.64
KRH45638	Soybean	cytosol	15.13	19.94
KRH70928	Soybean	cytosol	26.48	18.48
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	27.19	15.88
KRH67721	Soybean	endoplasmic reticulum, nucleus	30.26	15.84
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	30.26	15.78
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	30.26	15.72
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	30.02	15.72
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	30.02	15.62
KRH63585	Soybean	endoplasmic reticulum	30.02	15.6
KRH30601	Soybean	cytosol	29.55	15.51
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	29.55	15.49
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	29.55	15.49
KRH10420	Soybean	mitochondrion	17.73	15.15
KRH44049	Soybean	nucleus	27.42	14.66
KRG96401	Soybean	mitochondrion	26.24	12.08
KRH66707	Soybean	plastid	28.37	11.47
KRH68139	Soybean	cytosol	16.78	10.6
KRH50491	Soybean	cytosol	24.59	9.2
KRG95054	Soybean	plastid	14.42	7.91

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100819819	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
UniProt:A0A0R4J4L8	InterPro:AAA+_ATPase	EMBL:ACUP02007054	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil
EnsemblPlantsGene:GLYMA_11G199900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0036402
GO:GO:1901800	EnsemblPlants:KRH30673	ProteinID:KRH30673	ProteinID:KRH30673.1	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01242	UniParc:UPI0001D62D7E	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:27793135..27798340

Molecular Weight (calculated)

47409.7 Da

IEP (calculated)

5.262

GRAVY (calculated)

-0.402

Length

423 amino acids

Sequence
(BLAST)

001: MGSSAMVLDP KPSSEPPPFL ASTKSDYLQG GFSGSDATAS DEDDLYSRLK TLQRQLEFID IQEEYVKDEQ KNLKRELLRA QEEVKRIQSV PLVIGQFMEM
101: VDQNNGIVGS TTGSNYYVRI LSTINRELLK PSASVALHRH SNALVDVLPP EADSSISLLS QSEKPDVTYN DIGGCDIQKQ EIREAVELPL THHELYKQIG
201: IDPPRGVLLY GPPGTGKTML AKAVANHTTA AFIRVVGSEF VQKYLGEGPR MVRDVFRLAK ENAPAIIFID EVDAIATARF DAQTGADREV QRILMELLNQ
301: MDGFDQTVNV KVIMATNRAD TLDPALLRPG RLDRKIEFPL PDRRQKRLVF QVCTAKMNLS DEVDLEDYVS RPDKISAAEI SAICQEAGMH AVRKNRYVIL
401: PKDFEKGYRT NVKKPDTDFE FYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.