Factsheet for Os02t0325100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 6
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P12250_001	Banana	cytosol	70.17	97.03
TraesCS2D01G083900.1	Wheat	golgi	95.47	96.39
TraesCS2B01G100400.1	Wheat	cytosol, plastid	95.47	96.39
TraesCS2A01G086400.1	Wheat	cytosol	95.47	96.39
TraesCS2D01G476000.1	Wheat	cytosol	95.47	95.92
PGSC0003DMT400006190	Potato	cytosol	74.46	95.71
TraesCS2B01G499600.1	Wheat	cytosol	95.23	95.68
KXG39890	Sorghum	cytosol	95.23	95.0
TraesCS2A01G475900.1	Wheat	cytosol	95.23	93.44
Zm00001d050616_P002	Maize	plastid	95.23	91.94
HORVU3Hr1G067470.2	Barley	cytosol	49.4	91.19
CDX88666	Canola	cytosol	87.83	91.09
CDY43865	Canola	cytosol	87.83	91.09
CDY58566	Canola	cytosol	87.83	91.09
Bra002662.1-P	Field mustard	cytosol	87.59	90.84
CDY32995	Canola	cytosol, extracellular	87.59	90.84
Bra020378.1-P	Field mustard	cytosol	87.35	90.59
CDY02806	Canola	cytosol	87.35	90.59
CDY32714	Canola	cytosol	87.35	90.59
Bra006775.1-P	Field mustard	cytosol	84.49	90.54
AT5G58290.1	Thale cress	cytosol	87.83	90.2
VIT_06s0004g08220.t01	Wine grape	cytosol	89.98	90.19
Solyc06g082630.2.1	Tomato	cytosol, plastid	88.54	89.61
Solyc06g082660.2.1	Tomato	cytosol, nucleus	88.54	89.61
KRG98107	Soybean	cytosol	89.98	89.34
KRH30674	Soybean	cytosol, nucleus	87.83	89.1
KRH30673	Soybean	cytosol, nucleus	89.02	88.18
Zm00001d015886_P002	Maize	cytosol	83.53	64.58
Os09t0560200-01	Rice	cytosol, mitochondrion	50.12	46.88
Os02t0784700-00	Rice	cytosol	21.0	46.81
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	45.11	42.19
Os03t0298400-01	Rice	plasma membrane	44.63	41.56
Os02t0199900-01	Rice	nucleus, plasma membrane	38.19	40.0
Os06t0607800-01	Rice	nucleus	37.47	39.15
Os06t0600100-01	Rice	plasma membrane	38.42	38.06
Os02t0803700-01	Rice	cytosol, nucleus, plastid	38.9	38.0
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	38.42	37.53
Os02t0205300-01	Rice	cytosol	37.95	37.5
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	37.23	36.62
Os04t0284600-01	Rice	cytosol	30.31	35.57
Os05t0376200-00	Rice	cytosol	25.06	26.85
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	11.22	24.1
Os04t0498800-01	Rice	cytosol	29.36	21.28
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	30.31	15.7
Os06t0109400-01	Rice	cytosol	28.4	15.45
Os08t0556550-01	Rice	cytosol	3.82	14.95
Os08t0413000-00	Rice	mitochondrion	30.55	14.16
Os04t0617600-01	Rice	cytosol	25.78	11.49
Os11t0220400-01	Rice	mitochondrion	1.43	1.28
Os06t0600301-00	Rice	plasma membrane	0.24	0.44
Os08t0556400-01	Rice	endoplasmic reticulum, golgi, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:4329182
InterPro:AAA+_ATPase	EMBL:AK071476	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:BAD15686.1	ProteinID:BAF08614.1
ProteinID:BAS78403.1	ProteinID:BAS78404.1	ncoils:Coil	GO:GO:0000166	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433
GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	EnsemblPlantsGene:Os02g0325100
EnsemblPlants:Os02t0325100-01	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073
PANTHER:PTHR23073:SF8	UniProt:Q6Z875	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI0000358B27
RefSeq:XP_015626952.1	SEG:seg	:	:	:	:

Description

19S REGULATORY PARTICLE ATPASE SUBUNIT 3Similar to 26S protease regulatory subunit 6B (MIP224) (MB67 interacting protein) (TAT-binding protein-7) (TBP-7). (Os02t0325100-01);Similar to 26S proteasome regulatory particle triple-A ATPase subunit3 (Fragment). (Os02t0325100-02)

Coordinates

chr2:+:13059150..13063734

Molecular Weight (calculated)

46457.7 Da

IEP (calculated)

5.929

GRAVY (calculated)

-0.328

Length

419 amino acids

Sequence
(BLAST)

001: MSTAATAPPP AAVLPAAPPP SYPATSAPSA SAAAAEDDDD LYGRLKSLQR HMEFVEIQEE YVKDEQKNLK RELLRAQEEV KRIQSVPLVI GQFMEMVDGN
101: NGIVGSTTGS NYYVRILSTI NRELLKPSAS VALHRHSNAL VDVLPPEADS SISLLGSSEK PNVTYTDIGG CDIQKQEIRE AVELPLTHHE LYKQIGIDPP
201: RGVLLYGPPG TGKTMLAKAV AHHTTAAFIR VVGSEFVQKY LGEGPRMVRD VFRLAKENAP AIIFIDEVDA IATARFDAQT GADREVQRIL MELLNQMDGF
301: DQTVNVKVIM ATNRADTLDP ALLRPGRLDR KIEFPLPDRR QKRLVFQVCT AKMNLSDEVD LEDYVSRPDK ISAADIAAIC QEAGMHAVRK NRYVILPKDF
401: EKGYRTNVKK PETDFDFYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.