CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	cytosol
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P12250_001	Banana	cytosol	70.24	97.36
HORVU2Hr1G107280.1	Barley	cytosol	85.71	97.3
HORVU2Hr1G014000.1	Barley	cytosol	93.81	96.1
PGSC0003DMT400006190	Potato	cytosol	74.52	96.01
TraesCS2D01G083900.1	Wheat	golgi	94.52	95.66
TraesCS2A01G086400.1	Wheat	cytosol	94.52	95.66
Os02t0325100-01	Rice	plastid	95.0	95.23
TraesCS2B01G100400.1	Wheat	cytosol, plastid	94.05	95.18
Zm00001d050616_P002	Maize	plastid	98.1	94.93
TraesCS2D01G476000.1	Wheat	cytosol	93.57	94.24
TraesCS2B01G499600.1	Wheat	cytosol	93.33	94.0
TraesCS2A01G475900.1	Wheat	cytosol	93.81	92.27
HORVU3Hr1G067470.2	Barley	cytosol	49.29	91.19
CDY32995	Canola	cytosol, extracellular	87.62	91.09
Bra002662.1-P	Field mustard	cytosol	87.38	90.84
CDX88666	Canola	cytosol	87.38	90.84
CDY43865	Canola	cytosol	87.38	90.84
CDY58566	Canola	cytosol	87.38	90.84
Bra020378.1-P	Field mustard	cytosol	87.14	90.59
CDY02806	Canola	cytosol	87.14	90.59
CDY32714	Canola	cytosol	87.14	90.59
Bra006775.1-P	Field mustard	cytosol	84.05	90.28
AT5G58290.1	Thale cress	cytosol	87.62	90.2
Solyc06g082660.2.1	Tomato	cytosol, nucleus	88.81	90.1
VIT_06s0004g08220.t01	Wine grape	cytosol	89.52	89.95
Solyc06g082630.2.1	Tomato	cytosol, plastid	88.57	89.86
KRG98107	Soybean	cytosol	89.29	88.86
KRH30674	Soybean	cytosol, nucleus	87.38	88.86
KRH30673	Soybean	cytosol, nucleus	88.57	87.94
EER91182	Sorghum	cytosol	86.9	86.9
Zm00001d015886_P002	Maize	cytosol	86.67	67.16
EER99961	Sorghum	cytosol	45.95	43.18
EER88627	Sorghum	cytosol	38.33	40.45
EES06471	Sorghum	cytosol	38.1	40.0
EER88603	Sorghum	cytosol	38.1	38.19
EER87942	Sorghum	cytosol	38.57	37.67
KXG31298	Sorghum	cytosol	38.33	37.62
EES06492	Sorghum	cytosol	37.38	37.2
EES01223	Sorghum	cytosol	37.38	36.85
EES07646	Sorghum	cytosol	37.38	36.85
KXG26645	Sorghum	cytosol	28.57	21.13
EES14976	Sorghum	cytosol	31.67	16.79
EER95525	Sorghum	cytosol	30.71	16.54
KXG40206	Sorghum	cytosol	30.48	16.37
EER87717	Sorghum	cytosol	29.29	15.87
EER94171	Sorghum	cytosol	30.48	15.8
EER92840	Sorghum	cytosol	30.24	15.68
EES12865	Sorghum	mitochondrion	26.67	12.07
EES09632	Sorghum	cytosol, plastid	26.19	11.13
EES15200	Sorghum	cytosol	24.29	9.32

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	UniProt:A0A1B6QPQ3
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	GO:GO:0036402	GO:GO:1901800	EnsemblPlants:KXG39890	ProteinID:KXG39890
ProteinID:KXG39890.1	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073
PANTHER:PTHR23073:SF8	SMART:SM00382	EnsemblPlantsGene:SORBI_3001G458700	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI0001FCD6FE
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:73486430..73492499

Molecular Weight (calculated)

46704.0 Da

IEP (calculated)

5.932

GRAVY (calculated)

-0.334

Length

420 amino acids

Sequence
(BLAST)

001: MSAAPTGPAP PVATPMAPPP SYPASSTISA SVAASVEEED DLYGRLKSLQ RHMEFVEIQE EYVKDEQKNL KRELLRAQEE VKRIQSVPLV IGQFMEMVDG
101: NNGIVGSTTG SNYYVRILST INRELLKPSA SVALHRHSNA LVDVLPPEAD SSISLLGSSE KPNVTYNDIG GCDIQKQEIR EAVELPLTHH ELYKQIGIDP
201: PRGVLLYGPP GTGKTMLAKA VAHHTTAAFI RVVGSEFVQK YLGEGPRMVR DVFRLAKENA PAIIFIDEVD AIATARFDAQ TGADREVQRI LMELLNQMDG
301: FDQTVNVKVI MATNRADTLD PALLRPGRLD RKIEFPLPDR RQKRLVFQVC TAKMNLSDEV DLEDYVSRPD KISAADIAAI CQEAGMHAVR KNRYVILPKD
401: FEKGYRTNVK KPETDFDFYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.