CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG29764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19990.1	KXG29764	AT5G19960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P09950_001	Banana	cytosol	84.49	87.84
EES06492	Sorghum	cytosol	88.31	87.68
VIT_09s0002g05800.t01	Wine grape	cytosol	85.2	85.61
CDX70903	Canola	cytosol	84.49	85.1
AT5G19990.1	Thale cress	cytosol	84.49	84.49
CDY35832	Canola	cytosol	84.49	84.49
Solyc05g018590.2.1	Tomato	nucleus	84.01	84.41
AT5G20000.1	Thale cress	cytosol	84.25	84.25
Bra002279.1-P	Field mustard	cytosol	84.25	84.25
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	83.77	84.17
Bra006529.1-P	Field mustard	cytosol	84.01	84.01
KRH44668	Soybean	cytosol, mitochondrion, nucleus	83.53	83.73
KRH46990	Soybean	nucleus	83.29	83.49
PGSC0003DMT400038718	Potato	cytosol	74.7	72.29
CDX88865	Canola	cytosol, extracellular	80.19	53.42
CDY44958	Canola	cytosol, plasma membrane	84.01	48.82
CDY42324	Canola	cytosol, extracellular	83.53	48.81
Bra020079.1-P	Field mustard	cytosol	83.77	48.68
EES01223	Sorghum	cytosol	43.2	42.49
EES07646	Sorghum	cytosol	42.96	42.25
EES06471	Sorghum	cytosol	40.33	42.25
EER88627	Sorghum	cytosol	40.1	42.21
EER99961	Sorghum	cytosol	42.0	39.37
KXG31298	Sorghum	cytosol	39.62	38.78
EER87942	Sorghum	cytosol	39.62	38.6
EER91182	Sorghum	cytosol	38.42	38.33
KXG39890	Sorghum	cytosol	38.19	38.1
KXG26645	Sorghum	cytosol	28.64	21.13
EER87717	Sorghum	cytosol	29.36	15.87
EES14976	Sorghum	cytosol	29.36	15.53
EER92840	Sorghum	cytosol	29.12	15.06
EER94171	Sorghum	cytosol	28.88	14.94
EER95525	Sorghum	cytosol	27.21	14.62
KXG40206	Sorghum	cytosol	27.21	14.58
EES09632	Sorghum	cytosol, plastid	29.36	12.45
EES12865	Sorghum	mitochondrion	25.54	11.53
EES15200	Sorghum	cytosol	26.49	10.15
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:8082246
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:C5Z5K6	ncoils:Coil	EnsemblPlants:EER88603
ProteinID:EER88603	ProteinID:EER88603.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	SMART:SM00382	EnsemblPlantsGene:SORBI_3010G182000	SUPFAM:SSF52540	unigene:Sbi.5960
TIGRFAMs:TIGR01242	UniParc:UPI0001A89391	RefSeq:XP_002437236.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:52111939..52115686

Molecular Weight (calculated)

46618.1 Da

IEP (calculated)

9.547

GRAVY (calculated)

-0.254

Length

419 amino acids

Sequence
(BLAST)

001: MATVSMDIPK PSALTAAGHE AATAKTRGGG EGLGKYYNQH IQDLLLAVQQ RISDLSRLEA QRNDLNSQVK MCREELHLLQ EPGSHVGEVV KVMSKSKVLV
101: KVHPEGKYIV DVDKSIDIAK LTPSTRVALR SGSYMLHVIL PSKVDPLVNL MKVEKVPNST YDMIGGLDQQ IKEIKEVIEL PIKHPELFES LGIAQPKGVI
201: LYGPPGTGKT LLARAVAHHT DCTFIRVSGS ELVQKYIGEG SRMVRELFVM AREHAPSIIF MDEIDSIGSA RMESSGSGDS EVQRTMLELL NQLDGFEATN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPSETSRFD ILKIHSRRMN LMRGIDLKKI ATKMNGASGA ELKAICTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.