CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70900
CDX88867
CDY42320
CDY44955

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19990.1	CDX70900	AT5G19960.1	21798944
AT5G19990.1	CDX88867	AT5G19960.1	21798944
AT5G19990.1	CDY42320	AT5G19960.1	21798944
AT5G19990.1	CDY44955	AT5G19960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	34.98	99.55
CDY69655	Canola	cytosol, nucleus	35.29	97.8
Bra006529.1-P	Field mustard	cytosol	63.59	95.47
CDX70903	Canola	cytosol	63.12	95.43
CDY35832	Canola	cytosol	62.0	93.08
AT5G19990.1	Thale cress	cytosol	61.84	92.84
AT5G20000.1	Thale cress	cytosol	61.21	91.89
GSMUA_Achr7P09950_001	Banana	cytosol	57.23	89.33
KRH44668	Soybean	cytosol, mitochondrion, nucleus	58.66	88.28
KRH46990	Soybean	nucleus	58.51	88.04
VIT_09s0002g05800.t01	Wine grape	cytosol	58.35	88.01
TraesCS6D01G166700.1	Wheat	cytosol, golgi	58.35	87.8
TraesCS6B01G207100.1	Wheat	cytosol	58.35	87.8
TraesCS6A01G177600.1	Wheat	cytosol	58.35	87.8
Solyc05g018590.2.1	Tomato	nucleus	58.19	87.77
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	57.87	87.29
Zm00001d053616_P002	Maize	cytosol	58.51	87.2
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	58.35	86.97
Os02t0205300-01	Rice	cytosol	58.51	86.79
TraesCS7A01G372600.1	Wheat	cytosol	58.19	86.52
TraesCS7B01G254400.1	Wheat	cytosol	58.19	86.52
HORVU7Hr1G084550.2	Barley	cytosol	58.19	86.52
TraesCS7D01G350300.1	Wheat	cytosol	58.19	86.52
CDY42324	Canola	cytosol, extracellular	96.5	84.66
CDY44958	Canola	cytosol, plasma membrane	96.66	84.33
Os06t0600100-01	Rice	plasma membrane	55.01	81.8
EER88603	Sorghum	cytosol	53.42	80.19
HORVU6Hr1G036990.7	Barley	cytosol	58.35	79.44
PGSC0003DMT400038718	Potato	cytosol	51.03	74.13
Os06t0600301-00	Rice	plasma membrane	19.55	54.42
CDY39032	Canola	cytosol	18.92	47.41
CDY20370	Canola	cytosol	20.19	47.21
CDX74842	Canola	cytosol	29.25	44.66
CDY36602	Canola	cytosol	29.89	44.13
CDY30665	Canola	cytosol	29.89	44.13
CDY25685	Canola	cytosol	29.89	44.13
CDY24076	Canola	cytosol	29.89	44.13
CDY02494	Canola	cytosol	29.89	44.13
CDY25226	Canola	cytosol	27.98	44.11
CDY20470	Canola	cytosol, plasma membrane	29.73	43.9
CDY02428	Canola	cytosol, extracellular	27.82	43.86
CDX71534	Canola	cytosol	27.82	43.86
CDY22373	Canola	cytosol	27.82	43.86
CDY08201	Canola	cytosol	23.21	41.13
CDY39033	Canola	cytosol	26.23	40.64
CDX74142	Canola	cytosol	26.71	39.62
CDY40714	Canola	cytosol	26.71	39.62
CDY27761	Canola	cytosol	26.71	39.62
CDY05176	Canola	cytosol	26.71	39.62
CDY18782	Canola	cytosol	26.71	39.62
CDY18801	Canola	cytosol	26.71	39.62
CDY58566	Canola	cytosol	25.44	39.6
CDY43865	Canola	cytosol	25.44	39.6
CDX88666	Canola	cytosol	25.44	39.6
CDY32995	Canola	cytosol, extracellular	25.44	39.6
CDY32714	Canola	cytosol	25.44	39.6
CDY02806	Canola	cytosol	25.44	39.6
CDY06847	Canola	cytosol	27.03	38.37
CDY35245	Canola	cytosol	26.87	38.15
CDX92914	Canola	cytosol, extracellular	26.87	38.15
CDY14224	Canola	cytosol	26.87	37.98
CDX97472	Canola	cytosol	26.87	37.98
CDY30663	Canola	cytosol	26.07	37.96
CDY20371	Canola	cytosol, plastid	25.91	37.05
CDY59958	Canola	cytosol	20.99	36.26
CDY25624	Canola	cytosol	13.83	34.66
CDY04161	Canola	cytosol	17.65	18.41
CDX73996	Canola	cytosol	20.67	16.07
CDY07941	Canola	cytosol	20.67	16.07
CDY41316	Canola	cytosol, extracellular	20.67	16.05
CDY22207	Canola	cytosol	20.67	16.05
CDY41581	Canola	cytosol	20.51	15.97
CDY54618	Canola	cytosol	20.51	15.97
CDY11249	Canola	cytosol	20.19	15.91
CDX80862	Canola	cytosol, plastid	20.35	15.82
CDY13308	Canola	cytosol	20.35	15.8
CDX74308	Canola	mitochondrion	17.65	15.72
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	17.49	15.36
CDX84794	Canola	cytosol	17.65	14.94
CDY23949	Canola	cytosol	17.17	14.9
CDX67563	Canola	cytosol	20.35	14.56
CDY45794	Canola	nucleus	18.44	14.55
CDX91939	Canola	cytosol, mitochondrion	17.81	14.41
CDX78154	Canola	cytosol	16.69	14.11
CDX89923	Canola	cytosol	17.01	14.01
CDX73571	Canola	cytosol	16.53	14.0
CDX72118	Canola	plastid	19.4	12.92
CDX89698	Canola	endoplasmic reticulum	13.99	12.66
CDY37450	Canola	mitochondrion	18.6	12.65
CDY32490	Canola	mitochondrion	18.6	12.62
CDY56774	Canola	plastid	19.71	12.18
CDX69950	Canola	cytosol	17.81	10.26
CDY62119	Canola	cytosol	17.33	9.98
CDY02982	Canola	cytosol	17.65	9.41
CDY18139	Canola	extracellular, vacuole	2.23	4.62

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	MapMan:23.5.1.4	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
GO:A0A078DI11	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDX88865	ProteinID:CDX88865
ProteinID:CDX88865.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005524	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00148946001	InterPro:IPR002041	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF00071	PRINTS:PR00627	ScanProsite:PS00674	PFscan:PS51418	PANTHER:PTHR23073
PANTHER:PTHR23073:SF57	InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00382	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01242
UniParc:UPI0004EF4ABF	SEG:seg	:	:	:	:

Description

BnaA03g07840D

Coordinates

chrLK031856:-:1338035..1342912

Molecular Weight (calculated)

70903.8 Da

IEP (calculated)

7.433

GRAVY (calculated)

-0.350

Length

629 amino acids

Sequence
(BLAST)

001: MAAVGIETRR PEGAMEETCH VKGAVAKQGE GLKQYYLQHI DELQRLLRHK TNNLNRLEAQ RNDLNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKL TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEDSRCD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKFGYVIVQA LPNQQTVDYP SFKLVIVGDG GTGKTTFVKR HLTGEFEKKY EPTIGVEVHP LDFFTNCGKI RFYCWDTAGQ EKFGGLRDGY YIHGQCAVIM
501: FDVTARLTYK NVPTWHRDLC RVCENIPIVL CGNKVDVKNR QVKAKQVTFH RKKNLQYYEI SAKSNYNFEK PFLYLARKLA GDQNLHFVES PALAPPEVHI
601: DVAEQQRNEA DLIAAAAQPL PDDDDDAFE

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.