Factsheet for GSMUA_Achr7P09950_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P08450_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19990.1	GSMUA_Achr10P...	AT5G19960.1	21798944
AT5G19990.1	GSMUA_Achr7P08450_001	AT5G19960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	98.01	94.05
VIT_04s0008g04690.t01	Wine grape	cytosol	95.04	91.19
CDX70903	Canola	cytosol	93.55	90.62
AT5G19990.1	Thale cress	cytosol	94.04	90.45
Solyc05g018590.2.1	Tomato	nucleus	93.3	90.17
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	93.3	90.17
CDY35832	Canola	cytosol	93.55	89.98
Bra002279.1-P	Field mustard	cytosol	93.05	89.5
Bra006529.1-P	Field mustard	cytosol	93.05	89.5
KRH46990	Soybean	nucleus	92.56	89.23
KRH44668	Soybean	cytosol, mitochondrion, nucleus	92.56	89.23
AT5G20000.1	Thale cress	cytosol	92.56	89.02
EER88603	Sorghum	cytosol	87.84	84.49
PGSC0003DMT400038718	Potato	cytosol	82.63	76.91
CDX88865	Canola	cytosol, extracellular	89.33	57.23
GSMUA_AchrUn_...	Banana	cytosol	24.07	54.49
CDY42324	Canola	cytosol, extracellular	93.05	52.3
CDY44958	Canola	cytosol, plasma membrane	93.3	52.15
Bra020079.1-P	Field mustard	cytosol	93.05	52.01
GSMUA_Achr6P12250_001	Banana	cytosol	36.23	48.18
GSMUA_Achr11P...	Banana	cytosol	37.72	46.63
GSMUA_Achr8P16830_001	Banana	cytosol	46.9	44.47
GSMUA_AchrUn_...	Banana	cytosol	46.65	44.24
GSMUA_AchrUn_...	Banana	cytosol	43.18	43.39
GSMUA_Achr4P03720_001	Banana	cytosol	42.43	42.96
GSMUA_Achr7P17620_001	Banana	cytosol	42.93	42.2
GSMUA_Achr5P04520_001	Banana	cytosol	41.94	41.73
GSMUA_Achr9P13230_001	Banana	cytosol	41.94	41.73
GSMUA_Achr4P05850_001	Banana	cytosol	42.43	40.33
GSMUA_Achr4P05840_001	Banana	cytosol	41.94	40.14
GSMUA_Achr3P04570_001	Banana	cytosol	41.44	39.48
GSMUA_Achr7P21960_001	Banana	cytosol	38.96	32.44
GSMUA_Achr5P13290_001	Banana	cytosol	13.4	24.55
GSMUA_Achr3P00250_001	Banana	cytosol	10.17	20.92
GSMUA_Achr6P11080_001	Banana	plastid	30.52	20.53
GSMUA_Achr6P29120_001	Banana	cytosol	27.05	18.17
GSMUA_Achr7P04540_001	Banana	cytosol	29.78	15.19
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	30.02	14.96
GSMUA_Achr4P26800_001	Banana	cytosol	30.02	14.96
GSMUA_Achr9P23550_001	Banana	mitochondrion	29.53	14.76
GSMUA_Achr4P03560_001	Banana	mitochondrion	28.29	14.58
GSMUA_Achr3P00260_001	Banana	cytosol	14.89	12.3
GSMUA_Achr6P20030_001	Banana	cytosol	25.81	10.77
GSMUA_Achr11P...	Banana	cytosol	28.78	10.35
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
EnsemblPlantsGene:GSMUA_Achr7G09950_001	EnsemblPlants:GSMUA_Achr7P09950_001	EnsemblPlants:GSMUA_Achr7T09950_001	UniProt:M0TG83	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI000296CC18	SEG:seg	:	:	:	:

Description

26S protease regulatory subunit 8 homolog A [Source:GMGC_GENE;Acc:GSMUA_Achr7G09950_001]

Coordinates

chr7:+:8081381..8085467

Molecular Weight (calculated)

45449.6 Da

IEP (calculated)

9.532

GRAVY (calculated)

-0.370

Length

403 amino acids

Sequence
(BLAST)

001: MCAPPSRPRG GGGEGLRQYY LQHIHDLHLQ IRQKTNNLQR LEAQRNDLNS RVRALREELQ LLQEPGSYVG EVVKVMGKSK VLVKVHPEGK YVVDIDKSID
101: ITKLTPSTRV ALRNDSYVLH LILPSKVDPL VNLMKVEKVP DSTYDMIGGL DQQIKEIKEV IELPIKHPEL FESLGIAQPK GVLLYGPPGT GKTLLARAVA
201: HHTDCTFIRV SGSELVQKYI GEGSRMVREL FVMAREHAPS IIFMDEIDSI GSARMESGTG NGDSEVQRTM LELLNQLDGF EASNKIKVLM ATNRIDILDQ
301: ALLRPGRIDR KIEFPNPNEE SRFDILKIHS RKMNLMRGID LKKIAEKMNG ASGAELKAVC TEAGMFALRE RRVHVTQEDF EMAVAKVMKK ETEKNMSLRK
401: LWK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.