Factsheet for Bra020079.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006526.1-P
Bra020076.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19990.1	Bra006526.1-P	AT5G19960.1	21798944
AT5G19990.1	Bra020076.1-P	AT5G19960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44958	Canola	cytosol, plasma membrane	99.58	99.58
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	30.37	99.09
AT5G19990.1	Thale cress	cytosol	57.14	98.33
Bra002279.1-P	Field mustard	cytosol	56.87	97.85
CDY42324	Canola	cytosol, extracellular	96.67	97.21
Bra006529.1-P	Field mustard	cytosol	56.17	96.66
AT5G20000.1	Thale cress	cytosol	55.48	95.47
GSMUA_Achr7P09950_001	Banana	cytosol	52.01	93.05
KRH44668	Soybean	cytosol, mitochondrion, nucleus	53.68	92.58
Solyc05g018590.2.1	Tomato	nucleus	53.26	92.09
VIT_09s0002g05800.t01	Wine grape	cytosol	53.26	92.09
KRH46990	Soybean	nucleus	53.26	91.87
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	53.12	91.85
TraesCS6A01G177600.1	Wheat	cytosol	53.12	91.63
TraesCS6B01G207100.1	Wheat	cytosol	53.12	91.63
TraesCS6D01G166700.1	Wheat	cytosol, golgi	53.12	91.63
Zm00001d053616_P002	Maize	cytosol	53.4	91.23
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	53.26	91.0
Os02t0205300-01	Rice	cytosol	53.4	90.8
TraesCS7B01G254400.1	Wheat	cytosol	53.12	90.54
HORVU7Hr1G084550.2	Barley	cytosol	53.12	90.54
TraesCS7D01G350300.1	Wheat	cytosol	53.12	90.54
TraesCS7A01G372600.1	Wheat	cytosol	53.12	90.54
Os06t0600100-01	Rice	plasma membrane	50.35	85.82
EER88603	Sorghum	cytosol	48.68	83.77
HORVU6Hr1G036990.7	Barley	cytosol	53.12	82.9
PGSC0003DMT400038718	Potato	cytosol	47.16	78.52
Bra005023.1-P	Field mustard	cytosol	19.42	58.58
Os06t0600301-00	Rice	plasma membrane	17.89	57.08
Bra030922.1-P	Field mustard	cytosol	26.21	44.37
Bra033655.1-P	Field mustard	cytosol	24.55	44.36
Bra035338.1-P	Field mustard	cytosol	24.55	44.36
Bra039688.1-P	Field mustard	cytosol	26.07	44.13
Bra040569.1-P	Field mustard	cytosol	26.21	43.65
Bra039431.1-P	Field mustard	cytosol	23.86	40.57
Bra040214.1-P	Field mustard	cytosol	23.86	40.57
Bra001152.1-P	Field mustard	cytosol	23.86	40.57
Bra002662.1-P	Field mustard	cytosol	22.19	39.6
Bra020378.1-P	Field mustard	cytosol	22.19	39.6
Bra011079.1-P	Field mustard	cytosol	23.99	39.05
Bra010342.1-P	Field mustard	cytosol	23.99	38.88
Bra006775.1-P	Field mustard	cytosol	20.94	38.62
Bra024165.1-P	Field mustard	cytosol	15.81	35.29
Bra008198.1-P	Field mustard	cytosol	23.16	26.59
Bra017378.1-P	Field mustard	cytosol	15.4	18.41
Bra001297.1-P	Field mustard	cytosol	17.89	15.95
Bra034089.1-P	Field mustard	cytosol	17.89	15.93
Bra029795.1-P	Field mustard	cytosol	17.75	15.82
Bra003123.1-P	Field mustard	cytosol	17.61	15.68
Bra006978.1-P	Field mustard	cytosol	17.2	15.29
Bra022833.1-P	Field mustard	cytosol	15.12	14.67
Bra000999.1-P	Field mustard	cytosol, mitochondrion	15.4	13.33
Bra007262.1-P	Field mustard	plastid	17.2	12.65
Bra005733.1-P	Field mustard	cytosol	17.34	11.32
Bra009342.1-P	Field mustard	cytosol	15.53	9.99
Bra032565.1-P	Field mustard	mitochondrion	16.78	6.49

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	MapMan:23.5.1.4	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra020079	EnsemblPlants:Bra020079.1	EnsemblPlants:Bra020079.1-P
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005524	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	InterPro:IPR002041	UniProt:M4DU86	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF00071	PRINTS:PR00627	ScanProsite:PS00674	PFscan:PS51418	PANTHER:PTHR23073	PANTHER:PTHR23073:SF57
InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00382
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01242	UniParc:UPI00025432F9
SEG:seg	:	:	:	:	:

Description

AT5G19990 (E=6e-228) RPT6A, ATSUG1 | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase

Coordinates

chrA02:+:4946361..4950889

Molecular Weight (calculated)

81252.1 Da

IEP (calculated)

8.390

GRAVY (calculated)

-0.450

Length

721 amino acids

Sequence
(BLAST)

001: MAAVGVESMR PETAMEETCN VKIAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDINKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFLRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEDSRCD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWKR PRGTKAEKDL TVEKGALKIE SDQKEGNLTV VRIASDLSEN PCKKFPLLKT PSPSRRFSPS SQYHLPARSL TSSDSCDSEN
501: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAV IMFDVTARLT
601: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDPNLHFV ESPALAPPEV HIDVAEQQKN
701: EADLIAAAAQ PLPDDDDDAF E

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.