Factsheet for Bra009342.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62119	Canola	cytosol	95.0	97.53
AT5G08470.1	Thale cress	cytosol	87.51	86.81
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	62.89	62.17
KRH50491	Soybean	cytosol	58.07	57.61
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	57.36	57.0
GSMUA_Achr11P...	Banana	cytosol	54.77	54.77
HORVU0Hr1G013350.2	Barley	cytosol	14.9	54.22
EES15200	Sorghum	cytosol	46.74	47.9
TraesCS7B01G174800.1	Wheat	cytosol	43.8	47.67
TraesCS7D01G277100.1	Wheat	cytosol, peroxisome, plastid	45.85	47.16
TraesCS7A01G277100.1	Wheat	peroxisome	45.85	47.16
HORVU7Hr1G058410.7	Barley	cytosol, peroxisome	46.03	46.61
TraesCS5D01G306600.2	Wheat	mitochondrion	44.07	45.16
TraesCS5B01G299200.1	Wheat	mitochondrion	43.98	45.06
Zm00001d049974_P004	Maize	peroxisome	44.6	44.84
TraesCS5A01G301500.1	Wheat	mitochondrion	42.37	44.15
HORVU5Hr1G078590.8	Barley	plastid	43.44	43.1
Bra005023.1-P	Field mustard	cytosol	6.96	32.64
Bra033655.1-P	Field mustard	cytosol	10.17	28.57
Bra035338.1-P	Field mustard	cytosol	10.17	28.57
Bra017378.1-P	Field mustard	cytosol	15.08	28.03
Bra002662.1-P	Field mustard	cytosol	9.81	27.23
Bra020378.1-P	Field mustard	cytosol	9.81	27.23
Bra002279.1-P	Field mustard	cytosol	10.08	26.97
Bra006529.1-P	Field mustard	cytosol	10.08	26.97
Bra006775.1-P	Field mustard	cytosol	9.37	26.85
Bra001297.1-P	Field mustard	cytosol	18.64	25.83
Bra011079.1-P	Field mustard	cytosol	10.17	25.73
Bra029795.1-P	Field mustard	cytosol	18.55	25.71
Bra034089.1-P	Field mustard	cytosol	18.55	25.68
Bra010342.1-P	Field mustard	cytosol	10.17	25.62
Bra003123.1-P	Field mustard	cytosol	18.47	25.56
Bra006978.1-P	Field mustard	cytosol	18.38	25.4
Bra030922.1-P	Field mustard	cytosol	9.46	24.88
Bra039688.1-P	Field mustard	cytosol	9.37	24.65
Bra040569.1-P	Field mustard	cytosol	9.28	24.02
Bra000999.1-P	Field mustard	cytosol, mitochondrion	17.57	23.65
Bra040214.1-P	Field mustard	cytosol	8.92	23.58
Bra039431.1-P	Field mustard	cytosol	8.92	23.58
Bra001152.1-P	Field mustard	cytosol	8.92	23.58
Bra022833.1-P	Field mustard	cytosol	15.43	23.28
Bra024165.1-P	Field mustard	cytosol	6.6	22.91
Bra007262.1-P	Field mustard	plastid	18.11	20.71
Bra005733.1-P	Field mustard	cytosol	18.64	18.93
Bra008198.1-P	Field mustard	cytosol	9.63	17.2
Bra020079.1-P	Field mustard	cytosol	9.99	15.53
Bra032565.1-P	Field mustard	mitochondrion	17.4	10.46
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.09	0.45

Protein Annotations

Gene3D:1.10.8.60	MapMan:23.4.1.5.1.1	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	EnsemblPlantsGene:Bra009342	EnsemblPlants:Bra009342.1	EnsemblPlants:Bra009342.1-P	InterPro:CDC48_domain_2-like_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005778
GO:GO:0006625	GO:GO:0006629	GO:GO:0006635	GO:GO:0006810	GO:GO:0007031	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016558
GO:GO:0016787	GO:GO:0042623	UniProt:M4CYP5	InterPro:P-loop_NTPase	InterPro:PEX-N_psi_beta-barrel	PFAM:PF00004
PFAM:PF09262	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF12	InterPro:Pex1	SMART:SM00382
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI0002543D59	SEG:seg	:

Description

AT5G08470 (E=0.0) PEX1 | PEX1 (peroxisome 1); ATP binding / ATPase/ binding / nucleoside-triphosphatase/ nucleotide binding / protein binding

Coordinates

chrA10:+:16267300..16273722

Molecular Weight (calculated)

122876.0 Da

IEP (calculated)

6.232

GRAVY (calculated)

-0.099

Length

1121 amino acids

Sequence
(BLAST)

0001: METEAVVRTV AGVDCFVSLP RQILHVLQST SSSLLPPLLP VELRSGDRRW PVAWSGSSSS SSAIEVARVF AESISLPDGT VVQVRVLSNM PKATLVTVEP
0101: ETEDDWEVLE LNAELAEAAI LSQVRILHEA MKFPLWLHDR TVIRFAVVST FPPKGVVQLV AGTEVAVAPK RRERNLNAKK GLDASSKDVK IMLRVQDTTR
0201: SAFHEADVKG FDVRVALTSV AYIHPETAEK YSLESLQMIS VSPRIPLKGS VKKDEDLNKK NSDASKVVEN DSHSSKKEPR RAFVRLVFSD LAAKGHLMMV
0301: ESLRLYLGAG LHSWVHLRGC NVNVHKEVPA FSLSPCIFKI SEKENVLDRG TDMLGNPNSN RRSSHPPSGL TTNVDVVDWS VHEKVVTALL SEGLHIEGEQ
0401: DNAYQLKNKK GLECLTRLWS LAQRDAIASV TGIDVSSLIL GRETLFHFEV GGLESYKSRD GQPSVVDLLE IRKDKIVPLE ILYVMTVSDE SSLRDKFVAY
0501: ELTLDRSEKK DNVVHIEPML EKMNLGEPIF FSSAKERHCN KGVSPDVSSL AWMGSAVSDV IKRMTVLLSP TAGMWFSKFS VPSPGHILIY GPPGSGKTIL
0601: ARAAAKYLEE QKDLLAHVIL VSCSALAMEK VQHIRQTLSS VIAEGLEHAP SVIILDDLDS IISSSSDNEG TQASNAITML TKFLTDVIDD YGEYRNTSCG
0701: IGPLAFVASV QSLEQIPQTL SSSGRFDFHV QLAAPATSER GAILKHEIQK RLLECSEDIL LELAAKCEGY DAYDLEILVD RAVHAAIGRH LPCESNVSKY
0801: TLVKEDFTRA MHEFVPVAMR DITKSASEGG RSGWEDVGGV TDVKNAIKEM IELPSRFPKI FAKSPLRLRS NVLLYGPPGC GKTHIVGAAA AACSLRFISV
0901: KGPELLNKYI GASEQSVRDI FAKAAAAAPC ILFFDEFDSI APKRGHDNTG VTDRVVNQFL TELDGVEVLT GVFVFAATSR PDLLDPALLR PGRLDRLLMC
1001: DFPSPPERLE ILTVLSRKLP MADDVDLDPI AAMTEGFSGA DLQALLSDAQ LAAVHEFLSK EDRTEPGTTP MITDPLLKSI ASKTKPSVSE AEKQKLYDIY
1101: SQFLDSRKSS REAKGKRATL A

Best Arabidopsis Sequence Match ( AT5G08470.1 )
(BLAST)

0001: MSRNRQIIIP DDVMETEAVV NTVAGVDCFV SLPRQLLHAL QSTSSSPLPP LLPVELRSGD RRWSVAWSGS SSSSSAIEIA RVFAESISLP DGTVVKVRVL
0101: PNVPKATLVT VEPETEDDWE VLELNAELAE AAILSQVRIL HETMKFPLWL HDRTVIRFSV VSTFPSKGVV QLVPGTEVAV APKRRDRNLK AKKSQEKECN
0201: NVKALLRVQE TDRSAFHEAD VKGFELRVAL TSIAYIHPET AKKHSLESLQ LISVSPRIPL KGSAKKDEAL NMKNSEASKV AENGTSSAKK EPRQAILRLV
0301: FSDLAAKGHL MMVESLRLYL GAGLHSWVYL RGCNVNEDKE IPALSLSPCV FKISENEKVL DKGTDRLGNN NSVRKSSHPP SGLSTYVDVV DWSVHDKVVT
0401: ALSSEGLHDE GNHDKNKKGL EYLTRLWSLA QLDAMASVTG VDVSSLIVGR ETFFHFEVRG LESYKSIDGQ PSVNDRWESG KKDKHTPLEI LYVMTVSDES
0501: LLGDKFAGYD LSLDRSEKSD NVVHIEPVLE KMNLGEPIYL KSAKETHCNK GVSPDISSLT WMGPIVSDVI KRMTVLLSPA AGMWFSKFKI PSPGHILIYG
0601: PPGSGKTILA RAAAKYFEEQ KDLLAHVILV SCSTLALEKV QHIHHVLSSV IAEGLEHAPS VIILDDLDSI ISSSSDTEGT QASVGVTMLT KFLTDVIDDY
0701: GEYRNSSCGI GPLAFVASVQ SLEQIPQTLS SSGRFDFHVQ LAAPATSERG AILKHEIQKR LLDCSEDILL NLAAKCEGYD AYDLEILVDR AVHAAIGRHL
0801: PLESNISKYN LVKEDFTRAM HDFVPVAMRD ITKSASEGGR LGWEDVGGVT DIKNAIKEMI ELPSKFPKIF AKSPLRLRSN VLLYGPPGCG KTHIVGAAAA
0901: ACSLRFISVK GPELLNKYIG ASEQAVRDIF SKAAAAAPCI LFFDEFDSIA PKRGHDNTGV TDRVVNQFLT ELDGVEVLTG VFVFAATSRP DLLDPALLRP
1001: GRLDRLLLCD FPSPPERLEI LTVLSRKLLM ADDIDLEPIA LMTEGFSGAD LQALLSDAQL AAVHEYLNRE DKPETGTTPI ITDPLLKSIA SKTKPSVSET
1101: EKQKLYDIYS QFLDSRKSSR EAKGKRATLA

Arabidopsis Description

PEX1Peroxisome biogenesis protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.