Factsheet for Bra030922.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25685	Canola	cytosol	99.77	99.77
Bra005023.1-P	Field mustard	cytosol	55.63	99.16
Bra039688.1-P	Field mustard	cytosol	98.36	98.36
AT1G53750.1	Thale cress	cytosol	98.12	98.12
Bra040569.1-P	Field mustard	cytosol	99.06	97.46
PGSC0003DMT400023656	Potato	cytosol	96.71	96.26
EES01223	Sorghum	cytosol	96.24	96.24
Zm00001d018309_P003	Maize	cytosol	96.01	96.01
EES07646	Sorghum	cytosol	96.01	96.01
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	96.24	95.57
PGSC0003DMT400012446	Potato	cytosol	96.24	95.57
TraesCS7D01G157200.1	Wheat	cytosol	95.31	95.31
TraesCS7B01G060900.1	Wheat	golgi	95.31	95.31
TraesCS7A01G156800.1	Wheat	cytosol	95.31	95.31
TraesCS6B01G376500.1	Wheat	golgi	94.6	94.6
HORVU6Hr1G083150.1	Barley	cytosol	94.6	94.6
TraesCS6D01G326400.1	Wheat	cytosol	94.6	94.6
TraesCSU01G080700.1	Wheat	cytosol	94.6	94.6
HORVU7Hr1G032070.1	Barley	cytosol	94.84	90.99
Zm00001d052078_P003	Maize	cytosol	96.01	89.5
VIT_11s0016g00230.t01	Wine grape	cytosol	78.64	78.82
KRH06953	Soybean	cytosol	48.36	76.3
Bra006529.1-P	Field mustard	cytosol	44.84	45.58
Bra002279.1-P	Field mustard	cytosol	44.37	45.11
Bra033655.1-P	Field mustard	cytosol	39.2	41.85
Bra035338.1-P	Field mustard	cytosol	38.73	41.35
Bra001152.1-P	Field mustard	cytosol	38.73	38.92
Bra039431.1-P	Field mustard	cytosol	38.73	38.92
Bra040214.1-P	Field mustard	cytosol	38.73	38.92
Bra020378.1-P	Field mustard	cytosol	36.62	38.61
Bra002662.1-P	Field mustard	cytosol	36.62	38.61
Bra011079.1-P	Field mustard	cytosol	38.73	37.25
Bra006775.1-P	Field mustard	cytosol	34.04	37.08
Bra010342.1-P	Field mustard	cytosol	38.73	37.08
Bra024165.1-P	Field mustard	cytosol	24.18	31.89
Bra020079.1-P	Field mustard	cytosol	44.37	26.21
Bra008198.1-P	Field mustard	cytosol	33.57	22.77
Bra017378.1-P	Field mustard	cytosol	26.76	18.91
Bra001297.1-P	Field mustard	cytosol	32.63	17.18
Bra029795.1-P	Field mustard	cytosol	32.63	17.18
Bra034089.1-P	Field mustard	cytosol	32.63	17.16
Bra003123.1-P	Field mustard	cytosol	32.63	17.16
Bra006978.1-P	Field mustard	cytosol	32.16	16.89
Bra022833.1-P	Field mustard	cytosol	28.17	16.15
Bra000999.1-P	Field mustard	cytosol, mitochondrion	28.17	14.41
Bra007262.1-P	Field mustard	plastid	29.58	12.86
Bra005733.1-P	Field mustard	cytosol	32.39	12.5
Bra009342.1-P	Field mustard	cytosol	24.88	9.46
Bra032565.1-P	Field mustard	mitochondrion	27.7	6.33
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra030922	EnsemblPlants:Bra030922.1	EnsemblPlants:Bra030922.1-P	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	UniProt:M4EQ51	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI0001D62E17	:	:	:	:	:

Description

AT1G53750 (E=3e-243) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase

Coordinates

chrA08:+:801530..803875

Molecular Weight (calculated)

47858.0 Da

IEP (calculated)

6.560

GRAVY (calculated)

-0.405

Length

426 amino acids

Sequence
(BLAST)

001: MTRDIEDEIR DEKNPRPLDE DDIALLKTYG LSPYSAANKK VEKEIKELAK RINDLCGIKE SDTGLALPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRTKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.