CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07646	Sorghum	cytosol	99.77	99.77
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	99.77	99.77
Zm00001d018309_P003	Maize	cytosol	99.77	99.77
Bra005023.1-P	Field mustard	cytosol	55.4	98.74
TraesCS7A01G156800.1	Wheat	cytosol	98.59	98.59
TraesCS7B01G060900.1	Wheat	golgi	98.59	98.59
TraesCS7D01G157200.1	Wheat	cytosol	98.59	98.59
GSMUA_AchrUn_...	Banana	cytosol	98.12	98.35
GSMUA_Achr8P16830_001	Banana	cytosol	97.89	98.12
PGSC0003DMT400023656	Potato	cytosol	98.12	97.66
Solyc03g123730.2.1	Tomato	nucleus	98.12	97.66
CDY36602	Canola	cytosol	97.42	97.42
VIT_09s0002g00170.t01	Wine grape	cytosol	97.42	97.42
CDY24076	Canola	cytosol	97.42	97.42
CDY30665	Canola	cytosol	97.18	97.18
Bra039688.1-P	Field mustard	cytosol	97.18	97.18
AT1G53750.1	Thale cress	cytosol	97.18	97.18
PGSC0003DMT400012446	Potato	cytosol	97.65	96.97
KRH69005	Soybean	nucleus	96.95	96.95
CDY25685	Canola	cytosol	96.24	96.24
CDY02494	Canola	cytosol	96.24	96.24
Bra030922.1-P	Field mustard	cytosol	96.24	96.24
CDX74842	Canola	cytosol	92.25	95.39
CDY20470	Canola	cytosol, plasma membrane	95.07	95.07
HORVU7Hr1G032070.1	Barley	cytosol	98.12	94.14
Bra040569.1-P	Field mustard	cytosol	95.31	93.76
CDY08201	Canola	cytosol	75.82	90.99
CDY30663	Canola	cytosol	77.7	76.62
AT1G53780.2	Thale cress	cytosol	83.33	57.26
EES06492	Sorghum	cytosol	45.31	45.73
EER88603	Sorghum	cytosol	42.49	43.2
EER88627	Sorghum	cytosol	38.5	41.21
EES06471	Sorghum	cytosol	38.5	41.0
EER87942	Sorghum	cytosol	39.67	39.3
KXG31298	Sorghum	cytosol	39.44	39.25
EER99961	Sorghum	cytosol	39.44	37.58
KXG39890	Sorghum	cytosol	36.85	37.38
EER91182	Sorghum	cytosol	35.92	36.43
KXG26645	Sorghum	cytosol	28.17	21.13
EER94171	Sorghum	cytosol	32.86	17.28
EER92840	Sorghum	cytosol	32.63	17.16
EES14976	Sorghum	cytosol	31.69	17.05
EER95525	Sorghum	cytosol	30.99	16.92
KXG40206	Sorghum	cytosol	30.99	16.88
EER87717	Sorghum	cytosol	30.05	16.52
EES09632	Sorghum	cytosol, plastid	30.05	12.96
EES12865	Sorghum	mitochondrion	27.0	12.39
EES15200	Sorghum	cytosol	24.88	9.69

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:8061827
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:C5XFY9	ncoils:Coil	EnsemblPlants:EES01223
ProteinID:EES01223	ProteinID:EES01223.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	EnsemblPlantsGene:SORBI_3003G248600	SUPFAM:SSF52540	unigene:Sbi.15597
TIGRFAMs:TIGR01242	UniParc:UPI0001A8456C	RefSeq:XP_002456103.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:58746137..58750406

Molecular Weight (calculated)

47698.9 Da

IEP (calculated)

6.063

GRAVY (calculated)

-0.406

Length

426 amino acids

Sequence
(BLAST)

001: MAPEPEDEIM NEKNPRPLDE DDIALLKTYG LGPYSTSIKK VEKEIKEMAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTD
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LEGRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.