CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25685	Canola	cytosol	99.77	99.77
CDY24076	Canola	cytosol	98.59	98.59
CDY30665	Canola	cytosol	98.59	98.59
CDY36602	Canola	cytosol	98.59	98.59
AT1G53750.1	Thale cress	cytosol	98.12	98.12
Bra040569.1-P	Field mustard	cytosol	99.06	97.46
CDX74842	Canola	cytosol	93.43	96.6
CDY20470	Canola	cytosol, plasma membrane	96.48	96.48
PGSC0003DMT400023656	Potato	cytosol	96.71	96.26
EES01223	Sorghum	cytosol	96.24	96.24
EES07646	Sorghum	cytosol	96.01	96.01
Zm00001d018309_P003	Maize	cytosol	96.01	96.01
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	96.24	95.57
PGSC0003DMT400012446	Potato	cytosol	96.24	95.57
TraesCS7A01G156800.1	Wheat	cytosol	95.31	95.31
TraesCS7B01G060900.1	Wheat	golgi	95.31	95.31
TraesCS7D01G157200.1	Wheat	cytosol	95.31	95.31
TraesCS6B01G376500.1	Wheat	golgi	94.6	94.6
TraesCS6D01G326400.1	Wheat	cytosol	94.6	94.6
HORVU6Hr1G083150.1	Barley	cytosol	94.6	94.6
TraesCSU01G080700.1	Wheat	cytosol	94.6	94.6
HORVU7Hr1G032070.1	Barley	cytosol	94.84	90.99
CDY08201	Canola	cytosol	75.59	90.7
Zm00001d052078_P003	Maize	cytosol	96.01	89.5
VIT_11s0016g00230.t01	Wine grape	cytosol	78.64	78.82
CDY30663	Canola	cytosol	78.17	77.08
KRH06953	Soybean	cytosol	48.36	76.3
CDY20370	Canola	cytosol	29.11	46.1
CDX70903	Canola	cytosol	44.84	45.91
CDY35832	Canola	cytosol	44.6	45.35
CDY39032	Canola	cytosol	25.82	43.82
CDY22373	Canola	cytosol	39.2	41.85
CDX71534	Canola	cytosol	39.2	41.85
CDY25226	Canola	cytosol	38.97	41.6
CDY02428	Canola	cytosol, extracellular	38.73	41.35
CDY18782	Canola	cytosol	38.73	38.92
CDY18801	Canola	cytosol	38.73	38.92
CDX74142	Canola	cytosol	38.73	38.92
CDY05176	Canola	cytosol	38.73	38.92
CDY40714	Canola	cytosol	38.73	38.92
CDY27761	Canola	cytosol	38.73	38.92
CDX88666	Canola	cytosol	36.62	38.61
CDY32995	Canola	cytosol, extracellular	36.62	38.61
CDY32714	Canola	cytosol	36.62	38.61
CDY02806	Canola	cytosol	36.62	38.61
CDY43865	Canola	cytosol	36.62	38.61
CDY58566	Canola	cytosol	36.62	38.61
CDY06847	Canola	cytosol	38.97	37.47
CDY35245	Canola	cytosol	38.73	37.25
CDX97472	Canola	cytosol	38.73	37.08
CDY14224	Canola	cytosol	38.73	37.08
CDX92914	Canola	cytosol, extracellular	38.5	37.02
CDY39033	Canola	cytosol	34.51	36.21
CDY25624	Canola	cytosol	20.42	34.66
CDY20371	Canola	cytosol, plastid	33.8	32.73
CDY59958	Canola	cytosol	27.93	32.69
CDX88865	Canola	cytosol, extracellular	44.13	29.89
CDY42324	Canola	cytosol, extracellular	45.07	26.78
CDY44958	Canola	cytosol, plasma membrane	44.6	26.35
CDY04161	Canola	cytosol	26.76	18.91
CDY11249	Canola	cytosol	32.39	17.29
CDY41581	Canola	cytosol	32.63	17.2
CDY54618	Canola	cytosol	32.63	17.2
CDX73996	Canola	cytosol	32.63	17.18
CDY07941	Canola	cytosol	32.63	17.18
CDY41316	Canola	cytosol, extracellular	32.63	17.16
CDY22207	Canola	cytosol	32.63	17.16
CDY13308	Canola	cytosol	32.63	17.16
CDX74308	Canola	mitochondrion	28.17	17.0
CDX80862	Canola	cytosol, plastid	32.16	16.93
CDX84794	Canola	cytosol	28.17	16.15
CDY23949	Canola	cytosol	27.46	16.14
CDX67563	Canola	cytosol	32.39	15.7
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.29	15.64
CDX91939	Canola	cytosol, mitochondrion	28.4	15.57
CDX78154	Canola	cytosol	26.76	15.32
CDX73571	Canola	cytosol	26.29	15.07
CDY45794	Canola	nucleus	27.93	14.93
CDX89923	Canola	cytosol	26.06	14.53
CDX89698	Canola	endoplasmic reticulum	22.54	13.81
CDX72118	Canola	plastid	29.81	13.45
CDY32490	Canola	mitochondrion	27.7	12.73
CDY37450	Canola	mitochondrion	27.23	12.54
CDY56774	Canola	plastid	29.81	12.48
CDX69950	Canola	cytosol	25.12	9.8
CDY02982	Canola	cytosol	27.0	9.75
CDY62119	Canola	cytosol	24.88	9.71
CDY18139	Canola	extracellular, vacuole	4.23	5.94
CDY69655	Canola	cytosol, nucleus	0.23	0.44

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	GO:A0A078EPA6
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDY02494	ProteinID:CDY02494	ProteinID:CDY02494.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00114136001	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01242	UniParc:UPI0001D62E17	:	:	:	:

Description

BnaA08g01010D

Coordinates

chrLK031935:+:451438..454025

Molecular Weight (calculated)

47858.0 Da

IEP (calculated)

6.560

GRAVY (calculated)

-0.405

Length

426 amino acids

Sequence
(BLAST)

001: MTRDIEDEIR DEKNPRPLDE DDIALLKTYG LSPYSAANKK VEKEIKELAK RINDLCGIKE SDTGLALPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRTKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.