Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024165.1-P | Field mustard | cytosol | 88.74 | 100.0 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 75.55 | 65.32 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 75.55 | 64.86 |
| AT4G29040.1 | Thale cress | cytosol | 78.85 | 64.79 |
| CDY35245 | Canola | cytosol | 78.85 | 64.79 |
| CDX92914 | Canola | cytosol, extracellular | 78.85 | 64.79 |
| CDY06847 | Canola | cytosol | 78.57 | 64.56 |
| AT2G20140.1 | Thale cress | cytosol | 78.3 | 64.33 |
| CDY14224 | Canola | cytosol | 78.57 | 64.27 |
| CDX97472 | Canola | cytosol | 78.57 | 64.27 |
| KRH32292 | Soybean | cytosol, nucleus | 76.37 | 62.75 |
| KRH19693 | Soybean | cytosol | 76.37 | 62.75 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 76.92 | 62.64 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 75.82 | 62.59 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 76.92 | 62.5 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 76.37 | 62.47 |
| EER99961 | Sorghum | cytosol | 76.65 | 62.42 |
| KRH67524 | Soybean | nucleus | 76.37 | 62.33 |
| Os03t0298400-01 | Rice | plasma membrane | 76.92 | 62.22 |
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 76.65 | 62.14 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 76.65 | 62.14 |
| KRG95799 | Soybean | cytosol, nucleus | 76.1 | 62.11 |
| TraesCS4A01G115000.1 | Wheat | cytosol | 76.65 | 62.0 |
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 76.65 | 62.0 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 76.65 | 62.0 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 76.65 | 62.0 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 76.37 | 61.92 |
| Zm00001d028801_P001 | Maize | cytosol, extracellular | 75.82 | 61.88 |
| PGSC0003DMT400040872 | Potato | cytosol | 75.27 | 61.71 |
| PGSC0003DMT400051744 | Potato | cytosol | 75.27 | 61.71 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 75.0 | 61.49 |
| Zm00001d007215_P001 | Maize | cytosol | 76.37 | 59.91 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 37.91 | 54.98 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 37.64 | 54.58 |
| CDY20370 | Canola | cytosol | 27.75 | 37.55 |
| CDY32714 | Canola | cytosol | 39.29 | 35.4 |
| CDY58566 | Canola | cytosol | 39.29 | 35.4 |
| CDX88666 | Canola | cytosol | 39.29 | 35.4 |
| CDY43865 | Canola | cytosol | 39.29 | 35.4 |
| CDY02806 | Canola | cytosol | 39.29 | 35.4 |
| CDY32995 | Canola | cytosol, extracellular | 39.29 | 35.4 |
| CDY39032 | Canola | cytosol | 22.8 | 33.07 |
| CDY22373 | Canola | cytosol | 35.99 | 32.83 |
| CDY02428 | Canola | cytosol, extracellular | 35.99 | 32.83 |
| CDX71534 | Canola | cytosol | 35.99 | 32.83 |
| CDY25226 | Canola | cytosol | 35.71 | 32.58 |
| CDX70903 | Canola | cytosol | 36.54 | 31.97 |
| CDY35832 | Canola | cytosol | 36.54 | 31.74 |
| CDY27761 | Canola | cytosol | 35.44 | 30.42 |
| CDY05176 | Canola | cytosol | 35.44 | 30.42 |
| CDY40714 | Canola | cytosol | 35.44 | 30.42 |
| CDY18782 | Canola | cytosol | 35.44 | 30.42 |
| CDY18801 | Canola | cytosol | 35.44 | 30.42 |
| CDX74142 | Canola | cytosol | 35.44 | 30.42 |
| CDY08201 | Canola | cytosol | 29.12 | 29.86 |
| CDY39033 | Canola | cytosol | 32.69 | 29.31 |
| CDX74842 | Canola | cytosol | 32.69 | 28.88 |
| CDY02494 | Canola | cytosol | 32.69 | 27.93 |
| CDY30665 | Canola | cytosol | 32.69 | 27.93 |
| CDY36602 | Canola | cytosol | 32.69 | 27.93 |
| CDY24076 | Canola | cytosol | 32.69 | 27.93 |
| CDY25685 | Canola | cytosol | 32.69 | 27.93 |
| CDY20470 | Canola | cytosol, plasma membrane | 32.42 | 27.7 |
| CDY20371 | Canola | cytosol, plastid | 32.69 | 27.05 |
| CDY25624 | Canola | cytosol | 17.31 | 25.1 |
| CDY30663 | Canola | cytosol | 29.67 | 25.0 |
| CDX88865 | Canola | cytosol, extracellular | 36.26 | 20.99 |
| CDY42324 | Canola | cytosol, extracellular | 37.09 | 18.83 |
| CDY44958 | Canola | cytosol, plasma membrane | 37.09 | 18.72 |
| CDY04161 | Canola | cytosol | 24.45 | 14.76 |
| CDY33111 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 23.9 | 12.15 |
| CDX89923 | Canola | cytosol | 24.73 | 11.78 |
| CDY11249 | Canola | cytosol | 25.82 | 11.78 |
| CDY13308 | Canola | cytosol | 26.1 | 11.73 |
| CDX80862 | Canola | cytosol, plastid | 25.82 | 11.62 |
| CDY41581 | Canola | cytosol | 25.55 | 11.51 |
| CDY54618 | Canola | cytosol | 25.55 | 11.51 |
| CDY07941 | Canola | cytosol | 25.55 | 11.5 |
| CDX73996 | Canola | cytosol | 25.55 | 11.5 |
| CDY41316 | Canola | cytosol, extracellular | 25.55 | 11.48 |
| CDY22207 | Canola | cytosol | 25.55 | 11.48 |
| CDX74308 | Canola | mitochondrion | 21.7 | 11.19 |
| CDY23949 | Canola | cytosol | 22.25 | 11.17 |
| CDX84794 | Canola | cytosol | 22.53 | 11.04 |
| CDX67563 | Canola | cytosol | 26.37 | 10.92 |
| CDY45794 | Canola | nucleus | 23.35 | 10.66 |
| CDX78154 | Canola | cytosol | 21.15 | 10.35 |
| CDX91939 | Canola | cytosol, mitochondrion | 21.98 | 10.3 |
| CDX73571 | Canola | cytosol | 20.88 | 10.23 |
| CDY32490 | Canola | mitochondrion | 25.55 | 10.03 |
| CDY37450 | Canola | mitochondrion | 25.27 | 9.95 |
| CDX72118 | Canola | plastid | 25.27 | 9.75 |
| CDX89698 | Canola | endoplasmic reticulum | 18.41 | 9.64 |
| CDY56774 | Canola | plastid | 25.0 | 8.94 |
| CDY62119 | Canola | cytosol | 23.63 | 7.88 |
| CDX69950 | Canola | cytosol | 23.08 | 7.69 |
| CDY02982 | Canola | cytosol | 24.73 | 7.63 |
| CDY18139 | Canola | extracellular, vacuole | 3.3 | 3.96 |
| CDY69655 | Canola | cytosol, nucleus | 0.27 | 0.44 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:2.40.50.140 | InterPro:26S_subunit_4 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078J2L0 |
| UniProt:A0A078J2L0 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlants:CDY59958 | ProteinID:CDY59958 |
| ProteinID:CDY59958.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0036402 | GO:GO:1901800 | EnsemblPlantsGene:GSBRNA2T00027928001 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 |
| PANTHER:PTHR23073 | PANTHER:PTHR23073:SF42 | SMART:SM00382 | SUPFAM:SSF52540 | UniParc:UPI0004EF0BC4 | SEG:seg |
Description
BnaA03g58880D26S proteasome regulatory subunit 4 homolog A [Source:Projected from Arabidopsis thaliana (AT4G29040) UniProtKB/Swiss-Prot;Acc:Q9SZD4]
Coordinates
chrLK033824:+:19077..22896
Molecular Weight (calculated)
40127.1 Da
IEP (calculated)
4.747
GRAVY (calculated)
-0.346
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAPAAQNGA DQGLSLDGGR VRGEPGEAEE DRSKVDDLRG TPMSVGNLEE LIDENHAIVS SSVGPEYYVG ILSFVDKDQL EPGCSILMHT KVLSVVGILH
101: DEVDPMVSVM KVEKAPLESY ADIGGLEAQI QEIKEAVELP LTHPELYENI GIKPPKGVIL YGEPGTGKTL LPKKYLRDGP KLVRELFRVA DDLSPSIVFI
201: DEIDAVGMMP NSGDVKVILA TNRIESLDPA LLRPGRIDRK IEFPLPDIKT RRRIFQIHTS KMTLSEDVNL EEFVMTKDEF SGADIKAICT EAGLRMKVTH
301: PDFKKAKEKV MFKKKEGIPE GSSSSSSSTS RNCAYRATNP FVLAFRKSEE IAAFLDKREE EDAE
101: DEVDPMVSVM KVEKAPLESY ADIGGLEAQI QEIKEAVELP LTHPELYENI GIKPPKGVIL YGEPGTGKTL LPKKYLRDGP KLVRELFRVA DDLSPSIVFI
201: DEIDAVGMMP NSGDVKVILA TNRIESLDPA LLRPGRIDRK IEFPLPDIKT RRRIFQIHTS KMTLSEDVNL EEFVMTKDEF SGADIKAICT EAGLRMKVTH
301: PDFKKAKEKV MFKKKEGIPE GSSSSSSSTS RNCAYRATNP FVLAFRKSEE IAAFLDKREE EDAE
001: MGQGPSGGLN RQGDRKPDGG EKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLAED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHV DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLAED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHV DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2BRPT2b [Source:UniProtKB/TrEMBL;Acc:A0A178VM16]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.