Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 97.21 | 97.21 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 82.07 | 45.78 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 80.48 | 45.09 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 80.48 | 44.99 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 80.08 | 44.97 |
| EER99961 | Sorghum | cytosol | 79.68 | 44.74 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 76.1 | 43.31 |
| Zm00001d007215_P001 | Maize | cytosol | 79.68 | 43.1 |
| KRG95799 | Soybean | cytosol, nucleus | 75.3 | 42.38 |
| CDX92914 | Canola | cytosol, extracellular | 74.5 | 42.21 |
| KRH67524 | Soybean | nucleus | 74.9 | 42.15 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 74.5 | 42.12 |
| PGSC0003DMT400040872 | Potato | cytosol | 74.5 | 42.12 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 74.5 | 42.02 |
| AT4G29040.1 | Thale cress | cytosol | 74.1 | 41.99 |
| AT2G20140.1 | Thale cress | cytosol | 74.1 | 41.99 |
| PGSC0003DMT400051744 | Potato | cytosol | 74.1 | 41.89 |
| CDY14224 | Canola | cytosol | 74.1 | 41.8 |
| Bra010342.1-P | Field mustard | cytosol | 74.1 | 41.8 |
| KRH32292 | Soybean | cytosol, nucleus | 73.71 | 41.76 |
| KRH19693 | Soybean | cytosol | 73.71 | 41.76 |
| CDX97472 | Canola | cytosol | 73.71 | 41.57 |
| CDY06847 | Canola | cytosol | 73.31 | 41.53 |
| CDY35245 | Canola | cytosol | 73.31 | 41.53 |
| Bra011079.1-P | Field mustard | cytosol | 73.31 | 41.53 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 68.53 | 40.57 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 65.74 | 39.19 |
| CDY59958 | Canola | cytosol | 54.58 | 37.64 |
| Bra024165.1-P | Field mustard | cytosol | 41.83 | 32.51 |
| HORVU2Hr1G014000.1 | Barley | cytosol | 31.08 | 19.02 |
| HORVU2Hr1G107280.1 | Barley | cytosol | 26.69 | 18.11 |
| HORVU6Hr1G032570.5 | Barley | cytosol | 25.9 | 15.89 |
| HORVU6Hr1G087650.1 | Barley | cytosol, plasma membrane | 23.9 | 15.62 |
| HORVU7Hr1G119300.13 | Barley | cytosol | 24.7 | 15.42 |
| HORVU7Hr1G084550.2 | Barley | cytosol | 25.5 | 15.13 |
| HORVU7Hr1G090380.3 | Barley | cytosol | 25.9 | 14.91 |
| HORVU6Hr1G036990.7 | Barley | cytosol | 25.5 | 13.85 |
| HORVU6Hr1G083150.1 | Barley | cytosol | 22.71 | 13.38 |
| HORVU7Hr1G032070.1 | Barley | cytosol | 22.71 | 12.84 |
| HORVU5Hr1G069560.1 | Barley | cytosol | 9.16 | 10.85 |
| HORVU0Hr1G013350.2 | Barley | cytosol | 11.16 | 9.09 |
| HORVU2Hr1G086170.2 | Barley | cytosol | 19.12 | 8.44 |
| HORVU0Hr1G038060.2 | Barley | cytosol | 17.53 | 8.32 |
| HORVU6Hr1G053620.1 | Barley | cytosol | 11.55 | 8.08 |
| HORVU3Hr1G067470.2 | Barley | cytosol | 7.17 | 7.93 |
| HORVU6Hr1G049800.1 | Barley | cytosol | 1.59 | 7.14 |
| HORVU4Hr1G072010.4 | Barley | cytosol | 20.32 | 6.26 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 19.52 | 6.22 |
| HORVU1Hr1G049910.1 | Barley | cytosol | 19.92 | 6.14 |
| HORVU4Hr1G071960.2 | Barley | cytosol | 19.92 | 6.12 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 19.52 | 6.06 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 19.52 | 6.02 |
| HORVU1Hr1G060370.1 | Barley | cytosol | 19.12 | 5.95 |
| HORVU2Hr1G011690.1 | Barley | cytosol | 19.52 | 5.95 |
| HORVU1Hr1G060340.2 | Barley | cytosol | 19.12 | 5.9 |
| HORVU3Hr1G029660.1 | Barley | cytosol, peroxisome | 0.8 | 5.88 |
| HORVU7Hr1G002880.2 | Barley | plastid | 18.73 | 5.87 |
| HORVU2Hr1G104530.9 | Barley | cytosol | 17.53 | 4.82 |
| HORVU1Hr1G015310.16 | Barley | cytosol, plastid | 18.73 | 4.68 |
| HORVU4Hr1G016200.10 | Barley | cytosol, plastid | 18.73 | 4.67 |
| HORVU7Hr1G058410.7 | Barley | cytosol, peroxisome | 18.33 | 4.16 |
| HORVU5Hr1G078590.8 | Barley | plastid | 17.53 | 3.89 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G091080.1 | EnsemblPlantsGene:HORVU1Hr1G091080 | Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0036402 | GO:GO:1901800 | InterPro:26S_subunit_4 | InterPro:P-loop_NTPase | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF42 |
| SEG:seg | SUPFAM:SSF52540 | UniParc:UPI000B4795A7 | UniProt:A0A287GPX9 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr1H:-:547411183..547413493
Molecular Weight (calculated)
27810.5 Da
IEP (calculated)
7.148
GRAVY (calculated)
-0.382
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: WGRVLRAAWA SRAVSPVTAS RATVPPATRR TRSSSRPPPR PSRVGRKQRK QRGSEAAARL PPVAPLSKCR LRLIKLDRVK DYLLMEEEFV ASQERLHPSE
101: DKTEEDRSKV DDLRGTPMSV GSLEEIIDES HAIVSSSVGP EYYVSILLFV DKDQLEPGCS ILMHNKVLSV VGILQDEVDP MVSVMKVEKA PLESYADIGG
201: LDAQIQEIKE AVELPLTHPE LYEDIGIRPP KGVILYGEPG IGKTLLAKDH H
101: DKTEEDRSKV DDLRGTPMSV GSLEEIIDES HAIVSSSVGP EYYVSILLFV DKDQLEPGCS ILMHNKVLSV VGILQDEVDP MVSVMKVEKA PLESYADIGG
201: LDAQIQEIKE AVELPLTHPE LYEDIGIRPP KGVILYGEPG IGKTLLAKDH H
001: MGQGPSGGLN RQGDRKPDGG EKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLAED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHV DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLAED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHV DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2BRPT2b [Source:UniProtKB/TrEMBL;Acc:A0A178VM16]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.