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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 4
  • cytosol 3
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G56690.1 HORVU0Hr1G001280.1 AT3G56800.1 11346951
AT3G56690.1 HORVU2Hr1G016740.4 AT3G56800.1 11346951
AT3G56690.1 HORVU3Hr1G038010.1 AT3G56800.1 11346951
AT3G56690.1 HORVU3Hr1G079210.4 AT3G56800.1 11346951
AT3G56690.1 HORVU4Hr1G026290.3 AT3G56800.1 11346951
AT3G56690.1 HORVU5Hr1G014060.1 AT3G56800.1 11346951
AT3G56690.1 HORVU5Hr1G014070.2 AT3G56800.1 11346951
AT3G56690.1 HORVU5Hr1G044710.4 AT3G56800.1 11346951
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G204700.1 Wheat cytosol, plastid 94.43 94.43
TraesCS4B01G108300.1 Wheat plastid 93.54 94.1
TraesCS4D01G105500.2 Wheat cytosol, plastid 93.54 93.54
HORVU1Hr1G015310.16 Barley cytosol, plastid 89.56 89.65
EES09632 Sorghum cytosol, plastid 69.09 70.34
Zm00001d049140_P006 Maize cytosol, plastid 69.09 69.15
GSMUA_Achr6P29120_001 Banana cytosol 38.27 64.17
PGSC0003DMT400018483 Potato cytosol 22.86 56.1
HORVU3Hr1G029660.1 Barley cytosol, peroxisome 1.89 55.88
CDX72118 Canola plastid 43.64 46.5
Solyc10g078320.1.1 Tomato nucleus 43.94 44.78
VIT_08s0040g00910.t01 Wine grape cytosol 46.92 44.57
Bra007262.1-P Field mustard plastid 43.04 44.18
AT3G56690.1 Thale cress cytosol, plastid 44.73 44.03
CDY56774 Canola plastid 44.14 43.61
KRH66707 Soybean plastid 45.33 43.59
KRG95054 Soybean plastid 31.91 41.63
HORVU2Hr1G086170.2 Barley cytosol 22.96 40.6
HORVU5Hr1G069560.1 Barley cytosol 8.45 40.09
HORVU0Hr1G038060.2 Barley cytosol 21.07 40.08
HORVU6Hr1G053620.1 Barley cytosol 13.32 37.33
HORVU3Hr1G067470.2 Barley cytosol 7.75 34.36
HORVU1Hr1G060370.1 Barley cytosol 27.44 34.2
HORVU1Hr1G060340.2 Barley cytosol 27.44 33.95
HORVU1Hr1G049910.1 Barley cytosol 27.44 33.91
HORVU4Hr1G072010.4 Barley cytosol 27.14 33.5
HORVU4Hr1G071960.2 Barley cytosol 27.14 33.41
HORVU0Hr1G006340.1 Barley cytosol 26.14 33.38
HORVU2Hr1G011690.1 Barley cytosol 26.94 32.89
HORVU3Hr1G029450.1 Barley cytosol 26.14 32.55
HORVU3Hr1G029440.1 Barley cytosol 26.14 32.31
HORVU6Hr1G049800.1 Barley cytosol 1.79 32.14
HORVU6Hr1G087650.1 Barley cytosol, plasma membrane 11.73 30.73
HORVU6Hr1G083150.1 Barley cytosol 12.62 29.81
HORVU7Hr1G119300.13 Barley cytosol 11.73 29.35
HORVU2Hr1G107280.1 Barley cytosol 10.64 28.92
HORVU6Hr1G032570.5 Barley cytosol 11.73 28.85
HORVU7Hr1G032070.1 Barley cytosol 12.72 28.83
HORVU7Hr1G002880.2 Barley plastid 22.86 28.71
HORVU0Hr1G013350.2 Barley cytosol 8.75 28.57
HORVU4Hr1G055060.1 Barley cytosol 12.72 28.44
HORVU2Hr1G014000.1 Barley cytosol 11.33 27.8
HORVU7Hr1G084550.2 Barley cytosol 11.63 27.66
HORVU7Hr1G090380.3 Barley cytosol 11.83 27.29
HORVU2Hr1G014770.2 Barley cytosol, plastid 11.93 27.21
HORVU6Hr1G036990.7 Barley cytosol 11.83 25.76
HORVU2Hr1G104530.9 Barley cytosol 19.48 21.47
HORVU3Hr1G095530.3 Barley mitochondrion, plastid 4.67 18.73
HORVU1Hr1G091080.1 Barley mitochondrion, plastid 4.67 18.73
HORVU7Hr1G058410.7 Barley cytosol, peroxisome 20.08 18.25
HORVU5Hr1G078590.8 Barley plastid 20.08 17.88
Protein Annotations
EnsemblPlants:HORVU4Hr1G016200.10EnsemblPlantsGene:HORVU4Hr1G016200Gene3D:1.10.8.60Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005524InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreInterPro:P-loop_NTPase
PANTHER:PTHR23077PANTHER:PTHR23077:SF27PFAM:PF00004ScanProsite:PS00674SEG:segSMART:SM00382
SUPFAM:SSF52540UniParc:UPI000295DF1CUniProt:M0XQZ7MapMan:35.1::
Description
No Description!
Coordinates
chrchr4H:-:65346816..65353561
Molecular Weight (calculated)
109143.0 Da
IEP (calculated)
5.532
GRAVY (calculated)
-0.211
Length
1006 amino acids
Sequence
(BLAST)
0001: MSSKGQKKKK PSVSPQPSPR TPLSRAREGT GGCILDLPST AARVAARYPA LVPRGGAGSF TGTVLDVVSR GGIRGGEGRL WLSVDAMASA GLRHGCLVSV
0101: SLVSSSSNSL DGFPLDSLFE ECARFFDLDV DNDLISNEAG VNFVTAKVSP SCEVQKNDIK LSWDLACTLG YPVIGRPLLI SPLYTSQAPK QTDGGEFLRV
0201: IKCSDLYLSL VPPKVAPPSR NKSESDCHPV RNVMFVESPK RIPSTSPCRN ESHDGASYSG SSLCLDRATA KSVLADEKIN DLLQISASRW LGGRHLMKGN
0301: YVPLPICGKL SMFVVLRAET DGSALDVVHE KSNSMSDAKV SVKLVETPAL FLVDRTTKVH LSDLSSSKES GSDKLGFLPE YSICADTGNE DTNHDQRLGG
0401: LSEVSAKVKE MISFSLADQI CLPMNGLHDL PRYKGILLYG PPGTGKTSLA SSCAYDLGAN LFTINGPEII SQYHGESEQA LYDAFTSAKQ AAPAVIFIDE
0501: LDAIAPARKD GGEELSLRMV ATLLKLMDEI GRNDRVILIA ATNRLESIDR ALLRPGRFDQ EIEIGVPSPG QRLDILHLLL SGVHHSLTSD EVESLAFATH
0601: GFVGADLAAL CNEAALSALR RYISVKESST QPLGDRATNA ENTNIQEFDG LLGHEISSLS SSLSKLTMPT EDYSWTNRGD IIESSELDDK KDELLLLVTK
0701: DDFGQAKMKV RPSAMREVML ELPKVQWEDV GGQARIKKQL IEAIQLPQKC PDAFERLGIR PPRGLLMIGP PGCSKTLMAR AVASEAKMNF LAVKGPELFS
0801: KWVGDSEKAV RSLFAKAKDN APAILFFDEI DGLAVTRGHG SNGISVADRV LSQLLQEMDG LDQKIGVTVI AATNRPDKID IALLRPGRFD RLLDVQPPDE
0901: ADREDIFRIH TRSTPCRHDV NLNELARLTE GYTGADIKLV CREAAVAALD ENFDIPEVAT THFKSAIDQV TPSDMKFYQE LAARFRRLVD DTDKETMPGT
1001: HTEPAT
Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)
001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
Arabidopsis Description
CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.