Factsheet for TraesCS4B01G108300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2B01G113800.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56690.1	TraesCS1A01G308700.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS1A01G308800.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS1B01G319300.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS1D01G308000.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS2B01G113800.2	AT3G56800.1	11346951
AT3G56690.1	TraesCS3A01G184500.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3A01G191900.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3A01G335000.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3B01G219900.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3B01G365900.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3D01G188600.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3D01G194500.2	AT3G56800.1	11346951
AT3G56690.1	TraesCS3D01G328300.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS4B01G131100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS4D01G126100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5A01G057100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5A01G057200.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5A01G139700.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5B01G059900.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5B01G137100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5D01G068000.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5D01G068100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5D01G153400.1	AT3G56800.1	11346951

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G204700.1	Wheat	cytosol, plastid	97.6	97.02
TraesCS4D01G105500.2	Wheat	cytosol, plastid	96.8	96.22
HORVU4Hr1G016200.10	Barley	cytosol, plastid	94.1	93.54
TraesCS1B01G089700.1	Wheat	cytosol, plastid	90.2	91.95
EES09632	Sorghum	cytosol, plastid	70.8	71.66
Zm00001d049140_P006	Maize	cytosol, plastid	70.7	70.35
GSMUA_Achr6P29120_001	Banana	cytosol	38.8	64.67
PGSC0003DMT400018483	Potato	cytosol	23.2	56.59
CDX72118	Canola	plastid	43.9	46.5
Solyc10g078320.1.1	Tomato	nucleus	44.7	45.29
VIT_08s0040g00910.t01	Wine grape	cytosol	47.7	45.04
AT3G56690.1	Thale cress	cytosol, plastid	45.1	44.13
Bra007262.1-P	Field mustard	plastid	43.2	44.08
KRH66707	Soybean	plastid	45.8	43.79
CDY56774	Canola	plastid	44.4	43.61
KRG95054	Soybean	plastid	32.3	41.89
TraesCS2B01G373100.1	Wheat	cytosol	23.4	41.12
TraesCS1B01G235400.1	Wheat	cytosol	24.7	38.47
TraesCS3B01G171400.1	Wheat	cytosol	24.9	34.25
TraesCS1B01G235300.1	Wheat	cytosol	27.3	34.12
TraesCS1B01G235500.1	Wheat	cytosol	27.2	34.0
TraesCS1B01G192400.1	Wheat	cytosol	27.4	33.91
TraesCS4B01G268400.1	Wheat	golgi	27.1	33.33
TraesCS1B01G419200.1	Wheat	cytosol	26.2	33.21
TraesCS1B01G259200.1	Wheat	cytosol	26.2	33.21
TraesCS3B01G154400.1	Wheat	cytosol	26.1	33.12
TraesCS4B01G268200.1	Wheat	cytosol	26.9	32.93
TraesCS3B01G172100.1	Wheat	cytosol	26.0	32.91
TraesCS3B01G171200.1	Wheat	cytosol	25.7	32.61
TraesCS3B01G172000.1	Wheat	cytosol	25.5	32.53
TraesCS6B01G188500.1	Wheat	cytosol	12.3	30.75
TraesCS5B01G323100.1	Wheat	cytosol	17.8	30.64
TraesCS3B01G171300.1	Wheat	cytosol	22.3	30.59
TraesCS7B01G060900.1	Wheat	golgi	13.0	30.52
TraesCS7B01G280400.1	Wheat	cytosol, unclear	12.1	30.25
TraesCS6B01G376500.1	Wheat	golgi	12.7	29.81
TraesCS3B01G487900.1	Wheat	mitochondrion	22.2	29.8
TraesCS7B01G468900.1	Wheat	cytosol	11.8	29.65
TraesCS7B01G036400.1	Wheat	cytosol	12.5	29.27
TraesCS3B01G457100.1	Wheat	cytosol, golgi	12.5	28.8
TraesCS6B01G207100.1	Wheat	cytosol	11.9	28.47
TraesCS4B01G189200.1	Wheat	cytosol	12.8	28.44
TraesCS2B01G105700.1	Wheat	cytosol	12.6	28.06
TraesCS2B01G100400.1	Wheat	cytosol, plastid	11.6	27.95
TraesCS7B01G254400.1	Wheat	cytosol	11.7	27.66
TraesCS2B01G499600.1	Wheat	cytosol	11.5	27.58
TraesCS2B01G494200.1	Wheat	cytosol	12.1	26.54
TraesCS2B01G493900.1	Wheat	cytosol	11.8	26.05
TraesCS2B01G480000.3	Wheat	mitochondrion	20.1	21.54
TraesCS5B01G299200.1	Wheat	mitochondrion	20.3	18.56
TraesCS7B01G174800.1	Wheat	cytosol	18.1	17.57

Protein Annotations

EnsemblPlants:TraesCS4B01G108300.1	EnsemblPlantsGene:TraesCS4B01G108300	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
PANTHER:PTHR23077	PANTHER:PTHR23077:SF27	PFAM:PF00004	ScanProsite:PS00674	SEG:seg	SMART:SM00382
SUPFAM:SSF52540	TIGR:cd00009	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4B:+:119259974..119271406

Molecular Weight (calculated)

108434.0 Da

IEP (calculated)

5.520

GRAVY (calculated)

-0.199

Length

1000 amino acids

Sequence
(BLAST)

001: MSSKGKKKQK PSVSPQPSPR TPLSRAREGT GPSTAAAAAA RYPALVPRGG AGCFTGTVFD VVSRGGIRGG EGRLWLSGDA MASSGLRHGC LVSVSLISSS
101: SNSLDEFPLD SLFEECTRFF DLDVDNDLIS NEAGVNFVTA KVFPSCEVQK NGIKLSWDLA CTLGYPVVGR PLLISPLYTS QAPKQTDGGE FLRVIKCSNL
201: YLSLVPPKVA PSNHNKSESD CHPVRNVMVT ESPKRIPSTS PCRNESHDGA SYSGSSLCLD QATAKSVLAD DKINDLLQTS ASRWLGGRHL LKGNYVPLPM
301: CGKLSMFIVL CAETDGSALD VVHEKSNSMS NAEVSGKLVG IPALFLVDRT TKVHLSDLSS SKEFGSDKLG FPPEYSMCAD TGNEDTNHNQ RLGGLSEVSA
401: KVKEMISFSL ADQISLPRNG LHDLPRYKGI LLYGPPGTGK TSLASSCAYD LGANLFTING PEIISQYHGE SEQALYDAFT SAKQAAPAVI FIDELDAIAP
501: ARKDGVEELS LRMVATLLKL MDEIGRNDRV ILIAATNRPE SIDRALLRPG RFDQEIEIGV PSPGQRLDIL HLLLSGVHHS LTSEEVECLA FATHGFVGAD
601: LAALCNEAAL SALRRYISVK ESSTQPLGDR ATHAEKTNIQ EIDGILGYEI SSLSSSLSKL TMSTEDYSWT NRGDIIESSE LDDKKDELLL LVTEDDFEQA
701: KMKVRPSAMR EVMLELPKVQ WEDVGGQARI KKQLIEAIQL PQKCPDAFER LGIRPPRGLL MIGPPGCSKT LMARAVASEA KMNFLAVKGP ELFSKWVGDS
801: EKAVRSLFAK AKDNAPAILF FDEIDGLAVT RGHGSNGISV ADRVLSQLLQ EMDGLDQKIG VTVIAATNRP DKIDIALLRP GRFDRLLDVQ PPDEADREDI
901: FRIHTRSIPC SHDVNLNELA RLTEGYTGAD IKLVCREAAV AALDENFDIP EVAITHFKSA IDRVSPSDMK FYQELAARFR RLVDDTDKAT LPGTHIEPAI

Best Arabidopsis Sequence Match ( AT3G56690.1 )
(BLAST)

0001: MPSKKKQSRT PSRLSNSEPP ASPRTPASST TSRDTDSINE EELRRSIEEA SAAFPCLLGK SAIIARVADV ASESIRGSKI WLSETSMVAA SLSPGSTVSV
0101: SLASPESRFS RSFPLSSIKA EYGDDSESII ADEPGNYFVL TTVFSSSKVF KDAVRISLNL CYGLGCPVSG RTVFVYPVSG PSLSDQFNGN GRSRYDDVNH
0201: LSLLACKELC LELTPFRNML QAKNAFESSY EQNGNGNSTP KTPANLQKFS SPRPKSPVSP IIEDSVFSCK QRFSSESSID LREVLSNESS KKLLQICASS
0301: WLYPCSLLYG NFVSVPILSE ICIFCVKRAD KRPSDTSNRN HAFMINQETK VYLHHTLDLA SEIQGRTFVQ GLQFDEGENV GCEISKLGGL SKEYAILRDI
0401: IDSSSIKNSL SSLGLRPTKG VLIHGPPGTG KTSLARTFAR HSGVNFFSVN GPEIISQYLG ESEKALDEVF RSASNATPAV VFIDDLDAIA PARKEGGEEL
0501: SQRMVATLLN LMDGISRTDG VVVIAATNRP DSIEPALRRP GRLDREIEIG VPSSTQRSDI LHIILRGMRH SLSNIQVEQL AMATHGFVGA DLSALCCEAA
0601: FVCLRRHLDQ SSSSSNLPLE EAPIAESSSN MSDISSDSSD SASSCITISA TTSGAQRSFS LDETVSLVAD DIQNNGNSCS EQMLRKQGEH TLSVGFEDFE
0701: NAKTKIRPSA MREVILEVPK VNWEDVGGQN EVKNQLMEAV EWPQKHQDAF KRIGTRPPSG ILMFGPPGCS KTLMARAVAS EAKLNFLAVK GPELFSKWVG
0801: ESEKAVRSLF AKARANAPSI IFFDEIDSLA SIRGKENDGV SVSDRVMSQL LVELDGLHQR VGVTVIAATN RPDKIDSALL RPGRFDRLLY VGPPNETDRE
0901: AILKIHLRKI PCSSDICLKE LASITKGYTG ADISLICREA AIAALEESLE MEEISMRHLK AAISQIEPTE ILSYKALSEK FQRLVHTDPQ REEEVTQPGN
1001: KSRSLWTPLR SVAMFLRRHI AS

Arabidopsis Description

CIP111Calmodulin-interacting protein 111 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.