Factsheet for TraesCS1B01G235400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G235300.1	Wheat	cytosol	97.98	78.62
TraesCS1A01G222100.1	Wheat	cytosol	97.04	77.88
TraesCS1D01G223800.1	Wheat	cytosol	96.57	77.5
TraesCS1B01G235500.1	Wheat	cytosol	96.42	77.38
TraesCS1D01G253100.1	Wheat	cytosol	96.26	77.25
TraesCSU01G001000.1	Wheat	cytosol	95.79	76.59
TraesCS1B01G192400.1	Wheat	cytosol	95.17	75.62
HORVU1Hr1G060370.1	Barley	cytosol	94.7	75.34
HORVU1Hr1G060340.2	Barley	cytosol	94.7	74.78
TraesCS4B01G268200.1	Wheat	cytosol	93.15	73.19
TraesCS4B01G268400.1	Wheat	golgi	92.68	73.19
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	91.28	72.44
EER94171	Sorghum	cytosol	91.28	72.35
Zm00001d014124_P001	Maize	cytosol, plasma membrane	91.28	72.26
Zm00001d032859_P006	Maize	plasma membrane	91.12	72.22
EER92840	Sorghum	cytosol	90.81	71.98
TraesCS3B01G154400.1	Wheat	cytosol	85.67	69.8
TraesCS3B01G172000.1	Wheat	cytosol	84.74	69.39
TraesCS3B01G172100.1	Wheat	cytosol	85.36	69.37
TraesCS1B01G419200.1	Wheat	cytosol	85.05	69.2
TraesCS3B01G171200.1	Wheat	cytosol	84.89	69.16
TraesCS1B01G259200.1	Wheat	cytosol	84.89	69.07
TraesCS3B01G171400.1	Wheat	cytosol	77.41	68.36
TraesCS3B01G171300.1	Wheat	cytosol	74.92	65.98
GSMUA_Achr3P00260_001	Banana	cytosol	47.2	62.09
TraesCS5B01G323100.1	Wheat	cytosol	56.07	61.96
TraesCS2B01G373100.1	Wheat	cytosol	35.36	39.89
TraesCS7B01G280400.1	Wheat	cytosol, unclear	20.56	33.0
TraesCS6B01G188500.1	Wheat	cytosol	20.41	32.75
TraesCS3B01G487900.1	Wheat	mitochondrion	37.54	32.35
TraesCS7B01G468900.1	Wheat	cytosol	19.94	32.16
TraesCS7B01G060900.1	Wheat	golgi	20.09	30.28
TraesCS6B01G376500.1	Wheat	golgi	19.78	29.81
TraesCS2B01G100400.1	Wheat	cytosol, plastid	19.0	29.4
TraesCS2B01G499600.1	Wheat	cytosol	19.0	29.26
TraesCS7B01G036400.1	Wheat	cytosol	19.0	28.57
TraesCS3B01G457100.1	Wheat	cytosol, golgi	19.0	28.11
TraesCS2B01G494200.1	Wheat	cytosol	19.31	27.19
TraesCS2B01G493900.1	Wheat	cytosol	18.69	26.49
TraesCS6B01G207100.1	Wheat	cytosol	17.13	26.32
TraesCS7B01G254400.1	Wheat	cytosol	17.29	26.24
TraesCS4B01G189200.1	Wheat	cytosol	17.76	25.33
TraesCS2B01G105700.1	Wheat	cytosol	17.6	25.17
TraesCS1B01G089700.1	Wheat	cytosol, plastid	37.85	24.77
TraesCS4B01G108300.1	Wheat	plastid	38.47	24.7
TraesCS2B01G480000.3	Wheat	mitochondrion	29.13	20.04
TraesCS5B01G299200.1	Wheat	mitochondrion	27.1	15.9
TraesCS7B01G174800.1	Wheat	cytosol	24.77	15.44

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:CDC48_domain_2-like_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243
EnsemblPlantsGene:TraesCS1B01G235400	EnsemblPlants:TraesCS1B01G235400.1	TIGR:cd00009	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:421494985..421496913

Molecular Weight (calculated)

71067.7 Da

IEP (calculated)

4.584

GRAVY (calculated)

-0.314

Length

642 amino acids

Sequence
(BLAST)

001: MTSVEFKVVE TDPAEYCIVA SDTEIFCDGE PVKREDEERL DDVGYDDVGG VRKQMAQIRE LVELPLRHPQ LFKCIGVKPP KGILLYGPPG TGKTLIARAV
101: ANETGAFFFL INGPEIMSKM AGESESNLRK AFEEAEKNAP AIIFIDEIDS IAPKRDKTNG EVERRIVSQL LTLMDGLKSR AHVIVMGATN RPNSIDLALR
201: RFGRFDREID IGVPDEVGRL EVLRIHTKNM KLAEDVELEH VSRDTHGYVG ADLAALCTEA ALQCIREKMD VIDLEDDTID AEILNSMAVT NDHFKIALGT
301: SNPSALRETI VEVPNVSWGD VGGLEGVKRE LQETVQYPVE YPKKFEKFGM SPSKGVLFYG PPGCGKTLLA KAIANECQAN FISITGPELL TMWFGESEAN
401: VRDIFDKARG SAPCVLFFDE LDSIATQRGN SVGDAGGAAD RVLNQLLTEM DGMNAKKTVF IIGATNRPDI IDPALLRPGR LDQLIYIPLP NVESRLQIFR
501: ACLRKSPMAK DVDLNALAKY TQGFSGADIT EICQRACKYA IRENIEKDME KERRLKENPE AMEEDEMDEI KDAHFEESMR YARRSVSDDD IRKYQAFAQT
601: LQQSRGFGSE FRFPDQPAAG ATAAANPFAA AATAAEVDDL YS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.