Factsheet for Zm00001d014124_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23508561

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014124_P001
Zm00001d016928_P010
Zm00001d024430_P002
Zm00001d025580_P001
Zm00001d027707_P001
Zm00001d032117_P001
Zm00001d032859_P006
Zm00001d048409_P001
Zm00001d049480_P005
Zm00001d050868_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	Zm00001d016928_P010	AT1G71830.1	15592873
AT3G09840.1	Zm00001d024430_P002	AT1G71830.1	15592873
AT3G09840.1	Zm00001d025580_P001	AT1G71830.1	15592873
AT3G09840.1	Zm00001d049480_P005	AT1G71830.1	15592873
AT3G09840.1	Zm00001d050868_P004	AT1G71830.1	15592873
AT3G09840.1	Zm00001d016928_P010	AT1G71830.1	16473966
AT3G09840.1	Zm00001d024430_P002	AT1G71830.1	16473966
AT3G09840.1	Zm00001d025580_P001	AT1G71830.1	16473966
AT3G09840.1	Zm00001d049480_P005	AT1G71830.1	16473966
AT3G09840.1	Zm00001d050868_P004	AT1G71830.1	16473966
AT3G09840.1	Zm00001d016928_P010	AT1G71830.1	16621602
AT3G09840.1	Zm00001d024430_P002	AT1G71830.1	16621602
AT3G09840.1	Zm00001d025580_P001	AT1G71830.1	16621602
AT3G09840.1	Zm00001d049480_P005	AT1G71830.1	16621602
AT3G09840.1	Zm00001d050868_P004	AT1G71830.1	16621602
AT3G09840.1	Zm00001d016928_P010	AT1G71830.1	17693538
AT3G09840.1	Zm00001d024430_P002	AT1G71830.1	17693538
AT3G09840.1	Zm00001d025580_P001	AT1G71830.1	17693538
AT3G09840.1	Zm00001d049480_P005	AT1G71830.1	17693538
AT3G09840.1	Zm00001d050868_P004	AT1G71830.1	17693538
AT3G09840.1	Zm00001d014124_P001	AT3G09840.1	15592873
AT3G09840.1	Zm00001d027707_P001	AT3G09840.1	15592873
AT3G09840.1	Zm00001d032117_P001	AT3G09840.1	15592873
AT3G09840.1	Zm00001d032859_P006	AT3G09840.1	15592873
AT3G09840.1	Zm00001d048409_P001	AT3G09840.1	15592873
AT3G09840.1	Zm00001d014124_P001	AT3G09840.1	16621602
AT3G09840.1	Zm00001d027707_P001	AT3G09840.1	16621602
AT3G09840.1	Zm00001d032117_P001	AT3G09840.1	16621602
AT3G09840.1	Zm00001d032859_P006	AT3G09840.1	16621602
AT3G09840.1	Zm00001d048409_P001	AT3G09840.1	16621602
AT3G09840.1	Zm00001d014124_P001	AT3G09840.1	17693538
AT3G09840.1	Zm00001d027707_P001	AT3G09840.1	17693538
AT3G09840.1	Zm00001d032117_P001	AT3G09840.1	17693538
AT3G09840.1	Zm00001d032859_P006	AT3G09840.1	17693538
AT3G09840.1	Zm00001d048409_P001	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94171	Sorghum	cytosol	99.26	99.38
Zm00001d032859_P006	Maize	plasma membrane	98.77	98.89
Zm00001d027707_P001	Maize	cytosol, plasma membrane	96.79	97.27
Zm00001d048409_P001	Maize	cytosol	96.18	97.01
HORVU4Hr1G071960.2	Barley	cytosol	95.81	95.1
TraesCS4B01G268200.1	Wheat	cytosol	95.81	95.1
TraesCS4D01G267800.1	Wheat	cytosol	95.31	95.08
TraesCS4D01G267600.2	Wheat	cytosol	95.81	94.99
HORVU4Hr1G072010.4	Barley	cytosol	95.44	94.97
TraesCS4B01G268400.1	Wheat	golgi	95.07	94.83
TraesCS4A01G035700.1	Wheat	plastid	94.94	94.71
TraesCS4A01G035500.1	Wheat	golgi, nucleus	95.44	94.62
HORVU0Hr1G038060.2	Barley	cytosol	60.42	92.63
KRH67721	Soybean	endoplasmic reticulum, nucleus	91.86	92.2
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	91.74	92.08
CDY11249	Canola	cytosol	90.38	91.85
AT5G03340.1	Thale cress	cytosol	91.49	91.6
VIT_08s0040g01480.t01	Wine grape	cytosol	90.88	91.44
Solyc06g074980.2.1	Tomato	nucleus	90.75	91.43
PGSC0003DMT400027096	Potato	cytosol	91.0	91.34
TraesCS1B01G235400.1	Wheat	cytosol	72.26	91.28
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	91.49	91.27
CDX73996	Canola	cytosol	91.0	91.22
Bra001297.1-P	Field mustard	cytosol	91.0	91.22
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	90.88	91.21
PGSC0003DMT400031321	Potato	cytosol	90.51	91.18
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	91.12	91.12
TraesCS1D01G223800.1	Wheat	cytosol	89.77	91.0
CDY22207	Canola	cytosol	90.88	90.99
CDY54618	Canola	cytosol	90.63	90.97
TraesCS1B01G192400.1	Wheat	cytosol	90.63	90.97
Bra034089.1-P	Field mustard	cytosol	90.75	90.86
CDY07941	Canola	cytosol	90.63	90.85
CDY41581	Canola	cytosol	90.51	90.84
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	90.38	90.83
CDY41316	Canola	cytosol, extracellular	90.63	90.74
Bra029795.1-P	Field mustard	cytosol	90.51	90.73
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	90.26	90.71
HORVU1Hr1G049910.1	Barley	cytosol	91.0	90.66
TraesCS1A01G222100.1	Wheat	cytosol	89.4	90.62
CDY13308	Canola	cytosol	90.51	90.62
CDX80862	Canola	cytosol, plastid	90.38	90.61
TraesCS1B01G235300.1	Wheat	cytosol	89.27	90.5
Bra003123.1-P	Field mustard	cytosol	90.38	90.49
AT3G09840.1	Thale cress	cytosol	90.26	90.48
HORVU1Hr1G060370.1	Barley	cytosol	90.01	90.46
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	89.77	90.43
PGSC0003DMT400050662	Potato	cytosol	89.77	90.43
PGSC0003DMT400055513	Potato	cytosol	89.77	90.21
TraesCSU01G001000.1	Wheat	cytosol	89.27	90.16
TraesCS1D01G253100.1	Wheat	cytosol	88.9	90.12
AT3G53230.1	Thale cress	cytosol	90.51	90.06
TraesCS1B01G235500.1	Wheat	cytosol	88.66	89.88
HORVU1Hr1G060340.2	Barley	cytosol	90.01	89.79
TraesCS1A01G190300.1	Wheat	cytosol	89.27	89.6
KRG99061	Soybean	cytosol	21.95	89.0
Solyc09g008070.2.1	Tomato	cytosol, unclear	88.41	88.74
Bra006978.1-P	Field mustard	cytosol	88.53	88.53
KRH30601	Soybean	cytosol	87.92	88.46
KRG94277	Soybean	cytosol	22.32	87.44
CDX78154	Canola	cytosol	80.15	87.37
CDX73571	Canola	cytosol	79.9	87.21
GSMUA_Achr3P00260_001	Banana	cytosol	51.42	85.45
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	75.96	85.08
VIT_06s0061g00340.t01	Wine grape	cytosol	78.91	83.66
CDX67563	Canola	cytosol	88.16	81.34
Zm00001d032117_P001	Maize	cytosol	27.5	69.69
Zm00001d050303_P001	Maize	cytosol	65.97	67.72
Bra005733.1-P	Field mustard	cytosol	91.37	67.12
KRH45638	Soybean	cytosol	26.14	66.04
Zm00001d025776_P002	Maize	cytosol	27.87	39.79
Zm00001d045163_P001	Maize	mitochondrion	7.89	36.36
Zm00001d009592_P001	Maize	cytosol	11.71	36.26
Zm00001d035913_P002	Maize	cytosol, mitochondrion	30.7	33.97
Zm00001d053649_P002	Maize	cytosol, mitochondrion	16.65	33.75
Zm00001d015788_P001	Maize	plasma membrane	16.65	33.75
Zm00001d045566_P001	Maize	cytosol, mitochondrion	31.69	33.46
Zm00001d046539_P002	Maize	cytosol, mitochondrion	16.28	33.17
Zm00001d018309_P003	Maize	cytosol	17.26	32.86
Zm00001d027244_P001	Maize	cytosol	14.67	32.51
Zm00001d022096_P002	Maize	mitochondrion	30.33	32.5
Zm00001d002717_P001	Maize	mitochondrion	15.91	31.62
Zm00001d052078_P003	Maize	cytosol	17.39	30.85
Zm00001d053999_P001	Maize	cytosol	15.04	29.68
Zm00001d053616_P002	Maize	cytosol	15.29	29.38
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	15.54	29.3
Zm00001d050616_P002	Maize	plastid	15.66	29.26
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	15.17	29.15
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	15.66	28.41
Zm00001d028801_P001	Maize	cytosol, extracellular	15.54	28.25
Zm00001d007215_P001	Maize	cytosol	15.78	27.59
Zm00001d018409_P007	Maize	cytosol	15.17	27.46
Zm00001d049140_P006	Maize	cytosol, plastid	33.66	27.16
Zm00001d002462_P010	Maize	mitochondrion	27.25	20.79
Zm00001d015886_P002	Maize	cytosol	12.58	18.82
Zm00001d049974_P004	Maize	peroxisome	22.69	16.5
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	4.32	13.83

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100382880	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300
UniProt:A0A1D6GQ42	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	ProteinID:AQK65287.1	ProteinID:AQK65288.1	ProteinID:AQK65289.1
ProteinID:AQK65290.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0051301	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382
SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243
UniParc:UPI0004DE95BE	EnsemblPlantsGene:Zm00001d014124	EnsemblPlants:Zm00001d014124_P001	EnsemblPlants:Zm00001d014124_T001	SEG:seg	:

Description

Cell division cycle protein 48

Coordinates

chr5:-:33239071..33244243

Molecular Weight (calculated)

90123.4 Da

IEP (calculated)

4.828

GRAVY (calculated)

-0.381

Length

811 amino acids

Sequence
(BLAST)

001: MASQGEPSAS ASDPKEKKDF STAILERKKS PNRLVVDEAT NDDNSVVALH PDTMERLQLF RGDTVLLKGK KRKDTICIVL ADETCEEPKV RMNKVVRQNL
101: RVRLGDVVSV HQCQDVKYGK RVHILPIDDT VEGITGNLFD AFLKPYFLEA YRPLRKGDLF LVRGGMRSVE FKVIETDPAE YCIVAPDTEI FCDGEPIKRE
201: DEERLDEVGY DDVGGVRKQM AQIRELVELP LRHPQLFKSI GVKPPKGILL YGPPGSGKTL IARAVANETG AFFFLINGPE IMSKLAGESE SNLRKAFEEA
301: EKNAPSIIFI DEIDSIAPKR EKTNGEVERR IVSQLLTLMD GLKSRSHVIV MGATNRPNSI DPALRRFGRF DREIDIGVPD EVGRLEVLRI HTKNMKLAED
401: VNLELISKDT HGYVGADLAA LCTEAALQCI REKMDIIDLE DETIDAEILN SMAVTNDHFK TALGTSNPSA LRETVVEVPN VSWEDIGGLE NVKRELQETV
501: QYPVEHPEKF EKFGMSPSKG VLFYGPPGCG KTLLAKAIAN ECQANFISVK GPELLTMWFG ESEANVREIF DKARQSAPCV LFFDELDSIA TQRGSSVGDA
601: GGAADRVLNQ LLTEMDGMNA KKTVFIIGAT NRPDIIDPAL LRPGRLDQLI YIPLPDEQSR LQIFKACLRK SPVAKDVDLN ALAKYTQGFS GADITEICQR
701: ACKYAIRENI EKDIERERRR KDNPEAMEED EVDEIAEIRA PHFEESMKYA RRSVSDADIR KYQAFAQTLQ QSRGFGSEFR FSDQPATAGA AAAADPFASA
801: GAAADDDDLY S

Best Arabidopsis Sequence Match ( AT3G53230.1 )
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Arabidopsis Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.