Factsheet for Zm00001d046539_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 29575040

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018409_P007
Zm00001d037481_P003
Zm00001d045163_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43010.1	Zm00001d018409_P007	AT3G05530.1	21798944
AT5G43010.1	Zm00001d037481_P003	AT3G05530.1	21798944
AT5G43010.1	Zm00001d045163_P001	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88627	Sorghum	cytosol	97.24	97.24
Os06t0607800-01	Rice	nucleus	93.97	93.27
TraesCS7D01G375500.1	Wheat	cytosol	93.47	93.0
TraesCS7B01G280400.1	Wheat	cytosol, unclear	93.47	93.0
TraesCS7A01G378600.1	Wheat	cytosol	93.22	92.75
Zm00001d053649_P002	Maize	cytosol, mitochondrion	92.96	92.5
Zm00001d015788_P001	Maize	plasma membrane	92.71	92.25
GSMUA_Achr4P03720_001	Banana	cytosol	91.46	91.46
KRH51796	Soybean	cytosol	91.21	91.21
KRH61120	Soybean	endoplasmic reticulum	91.21	91.21
KRH05868	Soybean	cytosol, nucleus	90.95	90.73
Solyc01g109940.2.1	Tomato	nucleus	90.7	90.7
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	90.7	90.48
PGSC0003DMT400079514	Potato	cytosol	90.45	90.45
GSMUA_AchrUn_...	Banana	cytosol	90.95	90.27
VIT_18s0001g13090.t01	Wine grape	cytosol	89.95	89.95
VIT_03s0038g04350.t01	Wine grape	cytosol	89.95	89.72
AT5G43010.1	Thale cress	cytosol	89.45	89.22
AT1G45000.1	Thale cress	cytosol	89.2	88.97
Bra035338.1-P	Field mustard	cytosol	89.2	88.97
CDY02428	Canola	cytosol, extracellular	89.2	88.97
Bra033655.1-P	Field mustard	cytosol	88.94	88.72
CDY25226	Canola	cytosol	88.94	88.72
CDY22373	Canola	cytosol	88.94	88.72
CDX71534	Canola	cytosol	88.94	88.72
GSMUA_Achr7P17620_001	Banana	cytosol	90.45	87.8
HORVU7Hr1G090380.3	Barley	cytosol	93.22	85.09
Solyc10g054040.1.1	Tomato	cytosol, unclear	82.16	81.95
CDY20370	Canola	cytosol	44.72	66.17
KRH51488	Soybean	mitochondrion	68.34	64.3
CDY39032	Canola	cytosol	38.94	61.75
CDY39033	Canola	cytosol	61.06	59.85
KRH00031	Soybean	plastid	50.5	58.26
CDY20371	Canola	cytosol, plastid	60.55	54.77
Zm00001d045163_P001	Maize	mitochondrion	18.59	42.05
Zm00001d053616_P002	Maize	cytosol	42.96	40.52
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	42.96	40.52
Bra008198.1-P	Field mustard	cytosol	60.8	38.53
Zm00001d018309_P003	Maize	cytosol	40.7	38.03
Zm00001d050616_P002	Maize	plastid	41.21	37.79
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	41.96	37.36
Zm00001d028801_P001	Maize	cytosol, extracellular	41.71	37.22
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	39.7	36.74
Zm00001d007215_P001	Maize	cytosol	41.96	35.99
Zm00001d052078_P003	Maize	cytosol	40.7	35.45
Zm00001d018409_P007	Maize	cytosol	38.94	34.6
Zm00001d032117_P001	Maize	cytosol	24.12	30.0
Zm00001d015886_P002	Maize	cytosol	32.66	23.99
Zm00001d009592_P001	Maize	cytosol	14.57	22.14
Zm00001d025776_P002	Maize	cytosol	31.41	22.01
Zm00001d027707_P001	Maize	cytosol, plasma membrane	33.42	16.48
Zm00001d048409_P001	Maize	cytosol	33.17	16.42
Zm00001d032859_P006	Maize	plasma membrane	33.17	16.3
Zm00001d014124_P001	Maize	cytosol, plasma membrane	33.17	16.28
Zm00001d035913_P002	Maize	cytosol, mitochondrion	29.15	15.83
Zm00001d045566_P001	Maize	cytosol, mitochondrion	29.65	15.36
Zm00001d050303_P001	Maize	cytosol	30.4	15.32
Zm00001d022096_P002	Maize	mitochondrion	28.39	14.93
Zm00001d049140_P006	Maize	cytosol, plastid	29.4	11.64
Zm00001d002462_P010	Maize	mitochondrion	28.39	10.63
Zm00001d049974_P004	Maize	peroxisome	25.13	8.97
Zm00001d002717_P001	Maize	mitochondrion	6.53	6.37
Zm00001d053999_P001	Maize	cytosol	6.03	5.84
Zm00001d027244_P001	Maize	cytosol	4.52	4.92
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	0.25	0.4

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	UniProt:A0A1D6P390
InterPro:AAA+_ATPase	ProteinID:AQL04472.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0036402
GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC6	PANTHER:PTHR23073
PANTHER:PTHR23073:SF59	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI0001D62D7D	EnsemblPlantsGene:Zm00001d046539
EnsemblPlants:Zm00001d046539_P002	EnsemblPlants:Zm00001d046539_T002	SEG:seg	:	:	:

Description

26S protease regulatory subunit S10B homolog B

Coordinates

chr9:+:94817079..94823847

Molecular Weight (calculated)

44517.2 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.328

Length

398 amino acids

Sequence
(BLAST)

001: MAEGGEEARR RAAIAEYRKK LLTCRELEAR VKTGRENLKN AKKNLEKTEE DLKSLQSVGQ IIGEVLRPLD KERFIVKASS GPRYVVACRS KVDKEKLIAG
101: TRVVLDMTTL TIMRILPREV DPVVYNMLHE DPGNVSYSAV GGLSDQIREL RESIELPLMN PELFLRVGIK PPKGVLLYGP PGTGKTLLAR AIASNIDANF
201: LKVVSSAIID KYIGESARLI REMFNYAREH QPCIIFMDEI DAIGGRRFSE GTSADREIQR TLMELLNQLD GFDELGKVKM IMATNRPDVL DPALLRPGRL
301: DRKIEIPLPN EQGRMEVLKI HAAGIAKHGE IDYEAVVKLA EGFNGADMRN LCTEAGMAAI RAERDYVIHE DFMKAVRKLN DAKKLESSAH YSADFGKD

Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)

001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.