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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 20408568
plasma membrane: 23508561
nucleus: 24677780
plasma membrane: 27341663
msms PMID: 24677780 doi
B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni
State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 23508561 doi
Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck
Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d018409_P007
Zm00001d037481_P003
Zm00001d045163_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G43010.1 Zm00001d018409_P007 AT3G05530.1 21798944
AT5G43010.1 Zm00001d037481_P003 AT3G05530.1 21798944
AT5G43010.1 Zm00001d045163_P001 AT3G05530.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES06471 Sorghum cytosol 99.5 99.5
Zm00001d053649_P002 Maize cytosol, mitochondrion 99.25 99.25
TraesCS6D01G149500.1 Wheat cytosol 88.25 98.06
Os02t0199900-01 Rice nucleus, plasma membrane 98.0 98.0
TraesCS6A01G162700.2 Wheat cytosol, golgi 96.75 96.75
TraesCS6B01G188500.1 Wheat cytosol 96.75 96.75
KRH51796 Soybean cytosol 92.75 93.22
KRH61120 Soybean endoplasmic reticulum 92.75 93.22
VIT_18s0001g13090.t01 Wine grape cytosol 92.5 92.96
KRH05868 Soybean cytosol, nucleus 92.5 92.73
Zm00001d046539_P002 Maize cytosol, mitochondrion 92.25 92.71
KRH15139 Soybean cytosol, endoplasmic reticulum, nucleus 92.25 92.48
VIT_03s0038g04350.t01 Wine grape cytosol 92.0 92.23
Solyc01g109940.2.1 Tomato nucleus 91.5 91.96
GSMUA_Achr4P03720_001 Banana cytosol 91.5 91.96
PGSC0003DMT400079514 Potato cytosol 91.25 91.71
GSMUA_AchrUn_... Banana cytosol 91.75 91.52
HORVU6Hr1G032570.5 Barley cytosol 93.25 91.2
AT1G45000.1 Thale cress cytosol 90.75 90.98
CDY22373 Canola cytosol 90.0 90.23
CDX71534 Canola cytosol 90.0 90.23
Bra033655.1-P Field mustard cytosol 90.0 90.23
AT5G43010.1 Thale cress cytosol 89.75 89.97
Bra035338.1-P Field mustard cytosol 89.75 89.97
CDY25226 Canola cytosol 89.75 89.97
CDY02428 Canola cytosol, extracellular 89.75 89.97
GSMUA_Achr7P17620_001 Banana cytosol 91.5 89.27
Solyc10g054040.1.1 Tomato cytosol, unclear 83.0 83.21
CDY20370 Canola cytosol 45.0 66.91
KRH51488 Soybean mitochondrion 67.5 63.83
CDY39032 Canola cytosol 38.5 61.35
KRH00031 Soybean plastid 51.75 60.0
CDY39033 Canola cytosol 60.0 59.11
CDY20371 Canola cytosol, plastid 59.5 54.09
Zm00001d045163_P001 Maize mitochondrion 18.75 42.61
Zm00001d053616_P002 Maize cytosol 43.0 40.76
Zm00001d016439_P003 Maize cytosol, extracellular, plasma membrane 43.0 40.76
Zm00001d018309_P003 Maize cytosol 41.0 38.5
Bra008198.1-P Field mustard cytosol 60.0 38.22
Zm00001d050616_P002 Maize plastid 40.5 37.33
Zm00001d028801_P001 Maize cytosol, extracellular 41.5 37.22
Zm00001d037481_P003 Maize cytosol, extracellular, plasma membrane 39.75 36.98
Zm00001d022573_P001 Maize cytosol, extracellular, plasma membrane 41.0 36.69
Zm00001d052078_P003 Maize cytosol 41.0 35.89
Zm00001d007215_P001 Maize cytosol 40.75 35.13
Zm00001d018409_P007 Maize cytosol 39.0 34.82
Zm00001d032117_P001 Maize cytosol 23.75 29.69
Zm00001d015886_P002 Maize cytosol 32.0 23.62
Zm00001d009592_P001 Maize cytosol 14.75 22.52
Zm00001d025776_P002 Maize cytosol 30.75 21.65
Zm00001d027707_P001 Maize cytosol, plasma membrane 34.0 16.85
Zm00001d048409_P001 Maize cytosol 33.75 16.79
Zm00001d032859_P006 Maize plasma membrane 33.75 16.67
Zm00001d014124_P001 Maize cytosol, plasma membrane 33.75 16.65
Zm00001d035913_P002 Maize cytosol, mitochondrion 30.0 16.37
Zm00001d045566_P001 Maize cytosol, mitochondrion 30.25 15.76
Zm00001d050303_P001 Maize cytosol 31.0 15.7
Zm00001d022096_P002 Maize mitochondrion 28.75 15.19
Zm00001d049140_P006 Maize cytosol, plastid 30.25 12.04
Zm00001d002462_P010 Maize mitochondrion 28.25 10.63
Zm00001d049974_P004 Maize peroxisome 25.25 9.06
Zm00001d002717_P001 Maize mitochondrion 7.0 6.86
Zm00001d053999_P001 Maize cytosol 6.5 6.33
Zm00001d027244_P001 Maize cytosol 5.0 5.46
Zm00001d033491_P001 Maize cytosol, plasma membrane, plastid 0.0 0.0
Protein Annotations
Gene3D:1.10.8.60EntrezGene:100282100MapMan:19.2.6.2.1.4Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300
InterPro:AAA+_ATPaseProteinID:AQK69542.1InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreUniProt:B4FTV9EMBL:BT040547
ncoils:CoilEMBL:EU959565GO:GO:0000166GO:GO:0000502GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0009056GO:GO:0009987
GO:GO:0016787GO:GO:0019538GO:GO:0030163GO:GO:0036402GO:GO:1901800InterPro:P-loop_NTPase
PFAM:PF00004ScanProsite:PS00674InterPro:PSMC6PANTHER:PTHR23073PANTHER:PTHR23073:SF59SMART:SM00382
SUPFAM:SSF52540TIGRFAMs:TIGR01242UniParc:UPI00017B7DAFEnsemblPlantsGene:Zm00001d015788EnsemblPlants:Zm00001d015788_P001EnsemblPlants:Zm00001d015788_T001
SEG:seg:::::
Description
proteasome component4 proteasome component4
Coordinates
chr5:+:119713521..119721731
Molecular Weight (calculated)
44573.9 Da
IEP (calculated)
7.541
GRAVY (calculated)
-0.320
Length
400 amino acids
Sequence
(BLAST)
001: MADAEDAAAA RRRAAITDYR KKLLNCRELE SRVGTVRESL KNAKRDFTKT EDDLKSLQSV GQIIGEVLRP LDNERFIVKA SSGPRYVVGC RSKVDKEKLT
101: SGTRVVLDMT TLTIMRTLPR EVDPVVYNML HEDPGNVSYS AVGGLSDQIR ELRESIELPL MNPELFLRVG IKPPKGVLLY GPPGTGKTLL ARAIASNIDA
201: NFLKIVSSAI IDKYIGESAR LIREMFGYAR DHQPCIIFMD EIDAIGGRRF SEGTSADREI QRTLMELLNQ LDGFDELGKV KMIMATNRPD VLDPALLRPG
301: RLDRKIEIPL PNEQSRMEVL KIHAAGIAKH GEIDYEAVVK LAEGFNGADL RNVCTEAGMA AIRAERDYVV HEDFMKAVRK LNDAKKLESS AHYSADFGKE
Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)
001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.