CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87942
KXG31298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43010.1	EER87942	AT3G05530.1	21798944
AT5G43010.1	KXG31298	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053649_P002	Maize	cytosol, mitochondrion	99.75	99.75
Zm00001d015788_P001	Maize	plasma membrane	99.5	99.5
Os02t0199900-01	Rice	nucleus, plasma membrane	98.5	98.5
TraesCS6D01G149500.1	Wheat	cytosol	88.5	98.33
TraesCS6B01G188500.1	Wheat	cytosol	97.25	97.25
TraesCS6A01G162700.2	Wheat	cytosol, golgi	97.25	97.25
VIT_18s0001g13090.t01	Wine grape	cytosol	93.0	93.47
EER88627	Sorghum	cytosol	93.0	93.47
KRH51796	Soybean	cytosol	92.75	93.22
KRH61120	Soybean	endoplasmic reticulum	92.75	93.22
KRH05868	Soybean	cytosol, nucleus	92.5	92.73
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	92.25	92.48
VIT_03s0038g04350.t01	Wine grape	cytosol	92.0	92.23
Solyc01g109940.2.1	Tomato	nucleus	91.75	92.21
GSMUA_AchrUn_...	Banana	cytosol	92.25	92.02
GSMUA_Achr4P03720_001	Banana	cytosol	91.5	91.96
PGSC0003DMT400079514	Potato	cytosol	91.5	91.96
HORVU6Hr1G032570.5	Barley	cytosol	93.75	91.69
AT1G45000.1	Thale cress	cytosol	91.25	91.48
CDY22373	Canola	cytosol	90.5	90.73
CDX71534	Canola	cytosol	90.5	90.73
Bra033655.1-P	Field mustard	cytosol	90.5	90.73
CDY02428	Canola	cytosol, extracellular	90.25	90.48
Bra035338.1-P	Field mustard	cytosol	90.25	90.48
AT5G43010.1	Thale cress	cytosol	90.0	90.23
CDY25226	Canola	cytosol	90.0	90.23
GSMUA_Achr7P17620_001	Banana	cytosol	92.0	89.76
Solyc10g054040.1.1	Tomato	cytosol, unclear	83.25	83.46
CDY20370	Canola	cytosol	45.0	66.91
KRH51488	Soybean	mitochondrion	67.75	64.07
CDY39032	Canola	cytosol	38.5	61.35
KRH00031	Soybean	plastid	51.75	60.0
CDY39033	Canola	cytosol	60.0	59.11
CDY20371	Canola	cytosol, plastid	59.5	54.09
EES06492	Sorghum	cytosol	43.0	40.76
EER88603	Sorghum	cytosol	42.25	40.33
EES01223	Sorghum	cytosol	41.0	38.5
EES07646	Sorghum	cytosol	41.0	38.5
Bra008198.1-P	Field mustard	cytosol	60.0	38.22
KXG39890	Sorghum	cytosol	40.0	38.1
KXG31298	Sorghum	cytosol	39.75	37.15
EER87942	Sorghum	cytosol	39.75	36.98
EER99961	Sorghum	cytosol	41.0	36.69
EER91182	Sorghum	cytosol	38.5	36.67
KXG26645	Sorghum	cytosol	30.25	21.3
EER92840	Sorghum	cytosol	34.0	16.79
EER94171	Sorghum	cytosol	33.75	16.67
EER95525	Sorghum	cytosol	32.25	16.54
KXG40206	Sorghum	cytosol	32.25	16.5
EES14976	Sorghum	cytosol	31.5	15.91
EER87717	Sorghum	cytosol	30.25	15.61
EES09632	Sorghum	cytosol, plastid	31.0	12.55
EES12865	Sorghum	mitochondrion	27.75	11.96
EES15200	Sorghum	cytosol	27.5	10.05

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:8082914
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:C5XXK3	ncoils:Coil	EnsemblPlants:EES06471
ProteinID:EES06471	ProteinID:EES06471.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
InterPro:PSMC6	PANTHER:PTHR23073	PANTHER:PTHR23073:SF59	SMART:SM00382	EnsemblPlantsGene:SORBI_3004G082900	SUPFAM:SSF52540
unigene:Sbi.4030	TIGRFAMs:TIGR01242	UniParc:UPI0001A85C6D	RefSeq:XP_002453495.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:6807340..6812159

Molecular Weight (calculated)

44531.9 Da

IEP (calculated)

7.541

GRAVY (calculated)

-0.324

Length

400 amino acids

Sequence
(BLAST)

001: MADGEDAAAA RRRAAITDYR KKLLNCRELE SRVGTVRESL KNAKKDFTKT EDDLKSLQSV GQIIGEVLRP LDNERFIVKA SSGPRYVVGC RSKVDKEKLT
101: SGTRVVLDMT TLTIMRTLPR EVDPVVYNML HEDPGNVSYS AVGGLSDQIR ELRESIELPL MNPELFLRVG IKPPKGVLLY GPPGTGKTLL ARAIASNIDA
201: NFLKIVSSAI IDKYIGESAR LIREMFGYAR DHQPCIIFMD EIDAIGGRRF SEGTSADREI QRTLMELLNQ LDGFDELGKV KMIMATNRPD VLDPALLRPG
301: RLDRKIEIPL PNEQSRMEVL KIHAAGIAKH GEIDYEAVVK LAEGFNGADL RNVCTEAGMA AIRAERDYVV HEDFMKAVRK LNDAKKLESS AHYSADFGKE

Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)

001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.