CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G350300.1	Wheat	cytosol	95.73	95.51
TraesCS7B01G254400.1	Wheat	cytosol	95.73	95.51
TraesCS7A01G372600.1	Wheat	cytosol	95.73	95.51
HORVU7Hr1G084550.2	Barley	cytosol	95.73	95.51
GSMUA_Achr10P...	Banana	cytosol	93.6	94.05
EER88603	Sorghum	cytosol	87.68	88.31
EES01223	Sorghum	cytosol	45.73	45.31
EES07646	Sorghum	cytosol	45.5	45.07
EER88627	Sorghum	cytosol	40.76	43.22
EES06471	Sorghum	cytosol	40.76	43.0
KXG31298	Sorghum	cytosol	39.81	39.25
EER99961	Sorghum	cytosol	41.47	39.15
EER87942	Sorghum	cytosol	39.81	39.07
EER91182	Sorghum	cytosol	38.15	38.33
KXG39890	Sorghum	cytosol	37.2	37.38
KXG26645	Sorghum	cytosol	29.38	21.83
EER87717	Sorghum	cytosol	29.62	16.13
EES14976	Sorghum	cytosol	29.38	15.66
EER92840	Sorghum	cytosol	29.62	15.43
EER94171	Sorghum	cytosol	29.38	15.31
EER95525	Sorghum	cytosol	27.73	15.0
KXG40206	Sorghum	cytosol	27.73	14.96
EES09632	Sorghum	cytosol, plastid	29.38	12.55
EES12865	Sorghum	mitochondrion	26.07	11.85
EES15200	Sorghum	cytosol	27.01	10.42

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:8082935
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:C5XXY0	ncoils:Coil	EnsemblPlants:EES06492
ProteinID:EES06492	ProteinID:EES06492.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	SMART:SM00382	EnsemblPlantsGene:SORBI_3004G086600	SUPFAM:SSF52540	unigene:Sbi.11475
TIGRFAMs:TIGR01242	UniParc:UPI0001A85CC9	RefSeq:XP_002453516.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:7280375..7284738

Molecular Weight (calculated)

47189.7 Da

IEP (calculated)

9.354

GRAVY (calculated)

-0.338

Length

422 amino acids

Sequence
(BLAST)

001: MATVAMDISK PTPAASGDEA AAAAKGRSGA GGEGLRQYYL QHIHDLQLQI RQKTHNLNRL EAQRNDLNSR VRMLREELQL LQEPGSYVGE VVKVMGKSKV
101: LVKVHPEGKY VVDLDKSIDI TKITPSTRVA LRNDSYMLHL ILPSKVDPLV NLMKVEKVPD STYDMIGGLD QQIKEIKEVI ELPIKHPELF ESLGIAQPKG
201: VLLYGPPGTG KTLLARAVAH HTDCTFIRVS GSELVQKYIG EGSRMVRELF VMAREHAPSI IFMDEIDSIG SARMESGTGN GDSEVQRTML ELLNQLDGFE
301: ASNKIKVLMA TNRIDILDQA LLRPGRIDRK IEFPNPNEDS RFDILKIHSR KMNLMRGIDL KKIAEKMNGA SGAELKAVCT EAGMFALRER RVHVTQEDFE
401: MAVAKVMKKD TEKNMSLRKL WK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.