CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87942
EER88157
EER88603
EER88627
EER90506
EER91045
EER91182
EER92751
EER99181
EES01223
EES04466
EES04513
EES05555
EES06471
EES07646
EES07793
EES10115
EES11600
EES13525
EES13543
EES14113
EES15031
EES15319
EES17355
KXG26586
KXG27072
KXG31298
KXG36677
KXG39890
OQU75904
OQU77597
OQU81472
OQU81648
OQU82238
OQU85258
OQU89472
OQU89746
OQU93221

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29040.1	EES13543	AT1G04810.1	14623884
AT4G29040.1	KXG27072	AT1G04810.1	14623884
AT4G29040.1	EES14113	AT1G20200.1	14623884
AT4G29040.1	EES17355	AT1G29150.1	14623884
AT4G29040.1	OQU81648	AT1G29150.1	14623884
AT4G29040.1	EER88627	AT1G45000.1	14623884
AT4G29040.1	EES06471	AT1G45000.1	14623884
AT4G29040.1	EES01223	AT1G53750.1	14623884
AT4G29040.1	EES07646	AT1G53750.1	14623884
AT4G29040.1	EES10115	AT1G53850.1	14623884
AT4G29040.1	OQU93221	AT1G53850.1	14623884
AT4G29040.1	EER99181	AT1G56450.1	14623884
AT4G29040.1	EER88157	AT1G59900.1	24846764
AT4G29040.1	EES05555	AT1G59900.1	24846764
AT4G29040.1	EES13525	AT1G64520.1	14623884
AT4G29040.1	EES14113	AT1G75990.1	14623884
AT4G29040.1	EER92751	AT2G05840.1	14623884
AT4G29040.1	KXG36677	AT2G05840.1	14623884
AT4G29040.1	EES04513	AT2G20580.1	14623884
AT4G29040.1	EES13543	AT2G32730.1	14623884
AT4G29040.1	KXG27072	AT2G32730.1	14623884
AT4G29040.1	EER87942	AT3G05530.1	14623884
AT4G29040.1	KXG31298	AT3G05530.1	14623884
AT4G29040.1	EES10115	AT3G14290.1	14623884
AT4G29040.1	OQU93221	AT3G14290.1	14623884
AT4G29040.1	OQU75904	AT3G22110.1	14623884
AT4G29040.1	EER91045	AT3G22630.1	14623884
AT4G29040.1	EES15031	AT3G25860.1	24846764
AT4G29040.1	OQU89472	AT3G25860.1	24846764
AT4G29040.1	EES15319	AT3G60820.1	14623884
AT4G29040.1	OQU89746	AT3G60820.1	14623884
AT4G29040.1	KXG26586	AT4G24820.1	14623884
AT4G29040.1	OQU85258	AT4G24820.1	14623884
AT4G29040.1	EES04513	AT4G28470.1	14623884
AT4G29040.1	EES11600	AT5G05780.1	14623884
AT4G29040.1	EER88603	AT5G19990.1	14623884
AT4G29040.1	EER88603	AT5G20000.1	14623884
AT4G29040.1	EER92751	AT5G35590.1	14623884
AT4G29040.1	KXG36677	AT5G35590.1	14623884
AT4G29040.1	EES04466	AT5G42790.1	14623884
AT4G29040.1	OQU82238	AT5G45620.1	14623884
AT4G29040.1	EER91182	AT5G58290.1	14623884
AT4G29040.1	KXG39890	AT5G58290.1	14623884
AT4G29040.1	EER90506	AT5G64760.1	14623884
AT4G29040.1	EES07793	AT5G64760.1	14623884
AT4G29040.1	OQU77597	AT5G64760.1	14623884
AT4G29040.1	OQU81472	AT5G64760.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	99.33	99.33
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	97.99	97.77
TraesCS2D01G087900.1	Wheat	cytosol, golgi	97.09	96.66
TraesCS2B01G105700.1	Wheat	cytosol	97.09	96.66
TraesCS2A01G090000.1	Wheat	cytosol	96.87	96.44
Zm00001d007215_P001	Maize	cytosol	99.33	95.69
GSMUA_Achr4P05850_001	Banana	cytosol	89.26	94.1
KRG95799	Soybean	cytosol, nucleus	93.06	93.27
KRH32292	Soybean	cytosol, nucleus	92.39	93.23
KRH19693	Soybean	cytosol	92.39	93.23
KRH67524	Soybean	nucleus	92.84	93.05
GSMUA_Achr4P05840_001	Banana	cytosol	87.47	92.87
AT4G29040.1	Thale cress	cytosol	91.95	92.78
AT2G20140.1	Thale cress	cytosol	91.72	92.55
CDX97472	Canola	cytosol	91.72	92.13
Bra011079.1-P	Field mustard	cytosol	91.28	92.1
CDY35245	Canola	cytosol	91.28	92.1
Bra010342.1-P	Field mustard	cytosol	91.5	91.91
VIT_07s0005g05160.t01	Wine grape	cytosol	91.5	91.91
CDY14224	Canola	cytosol	91.5	91.91
Solyc06g083620.2.1	Tomato	nucleus, plastid	91.28	91.89
CDX92914	Canola	cytosol, extracellular	91.05	91.87
CDY06847	Canola	cytosol	91.05	91.87
PGSC0003DMT400040872	Potato	cytosol	91.05	91.67
PGSC0003DMT400051744	Potato	cytosol	90.83	91.44
HORVU2Hr1G014770.2	Barley	cytosol, plastid	88.81	90.02
HORVU3Hr1G095530.3	Barley	mitochondrion, plastid	44.97	80.08
HORVU1Hr1G091080.1	Barley	mitochondrion, plastid	44.74	79.68
CDY59958	Canola	cytosol	62.42	76.65
Bra024165.1-P	Field mustard	cytosol	55.26	76.47
KXG39890	Sorghum	cytosol	43.18	45.95
EER91182	Sorghum	cytosol	42.51	45.24
EER87942	Sorghum	cytosol	40.49	42.09
KXG31298	Sorghum	cytosol	40.27	42.06
EER88603	Sorghum	cytosol	39.37	42.0
EES06492	Sorghum	cytosol	39.15	41.47
EER88627	Sorghum	cytosol	36.91	41.46
EES06471	Sorghum	cytosol	36.69	41.0
EES07646	Sorghum	cytosol	37.58	39.44
EES01223	Sorghum	cytosol	37.58	39.44
KXG26645	Sorghum	cytosol	27.96	22.01
EER92840	Sorghum	cytosol	29.08	16.05
EER94171	Sorghum	cytosol	28.86	15.93
EES14976	Sorghum	cytosol	28.19	15.91
EER87717	Sorghum	cytosol	27.52	15.87
KXG40206	Sorghum	cytosol	26.85	15.35
EER95525	Sorghum	cytosol	26.62	15.26
EES12865	Sorghum	mitochondrion	26.85	12.93
EES09632	Sorghum	cytosol, plastid	28.19	12.75
EES15200	Sorghum	cytosol	24.61	10.05

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.2	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	InterPro:26S_subunit_4	Gene3D:3.40.50.300
EntrezGene:8077519	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:C5X6E9	EnsemblPlants:EER99961
ProteinID:EER99961	ProteinID:EER99961.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23073	PANTHER:PTHR23073:SF42	SMART:SM00382	EnsemblPlantsGene:SORBI_3002G428200	SUPFAM:SSF52540	unigene:Sbi.16958
TIGRFAMs:TIGR01242	UniParc:UPI0001A848D5	RefSeq:XP_002463440.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:77455037..77459989

Molecular Weight (calculated)

49421.8 Da

IEP (calculated)

6.073

GRAVY (calculated)

-0.406

Length

447 amino acids

Sequence
(BLAST)

001: MGQGTPGGMG KQGGAGDRKP GDGGDKKDKK FEPPAAPSRV GRKQRKQKGA EAAARLPNVA PLSKCRLRLL KLERVKDYLL MEEEFVAAQE RLRPQEDKAE
101: EDRSKVDDLR GTPMSVGSLE EIIDESHAIV SSSVGPEYYV GILSFVDKDQ LEPGCSILMH NKVLSVVGIL QDEVDPMVSV MKVEKAPLES YADIGGLDAQ
201: IQEIKEAVEL PLTHPELYED IGIRPPKGVI LYGEPGTGKT LLAKAVANST SATFLRVVGS ELIQKYLGDG PKLVRELFRV ADELSPSIVF IDEIDAVGTK
301: RYDAHSGGER EIQRTMLELL NQLDGFDSRG DVKVILATNR IESLDPALLR PGRIDRKIEF PLPDIKTRRR IFQIHTAKMT LADDVNLEEF VMTKDEFSGA
401: DIKAICTEAG LLALRERRMK VTHADFKKAK EKVMYKKKEG VPDGLYM

Best Arabidopsis Sequence Match ( AT4G29040.1 )
(BLAST)

001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM

Arabidopsis Description

RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.