Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77597 | Sorghum | plastid | 55.56 | 39.6 |
| EER90506 | Sorghum | cytosol | 41.67 | 6.77 |
| EES07793 | Sorghum | cytosol | 40.28 | 6.55 |
| CDY56539 | Canola | cytosol, nucleus | 30.56 | 5.76 |
| Solyc04g012040.2.1 | Tomato | cytosol | 34.72 | 5.66 |
| PGSC0003DMT400060796 | Potato | cytosol | 34.72 | 5.66 |
| Bra006038.1-P | Field mustard | cytosol | 30.56 | 5.21 |
| CDX81147 | Canola | cytosol | 30.56 | 5.21 |
| CDY40066 | Canola | cytosol | 30.56 | 5.21 |
| AT5G64760.1 | Thale cress | cytosol | 31.94 | 5.2 |
| Solyc04g051370.2.1 | Tomato | nucleus | 31.94 | 5.2 |
| CDY21613 | Canola | cytosol | 29.17 | 4.98 |
| CDX69878 | Canola | cytosol | 29.17 | 4.98 |
| Bra009074.1-P | Field mustard | cytosol | 29.17 | 4.98 |
| CDX85790 | Canola | cytosol | 30.56 | 4.91 |
| Bra028611.1-P | Field mustard | cytosol | 30.56 | 4.91 |
| PGSC0003DMT400050736 | Potato | cytosol | 31.94 | 4.88 |
| AT5G09900.3 | Thale cress | nucleus | 27.78 | 4.33 |
| KRH64121 | Soybean | cytosol | 26.39 | 4.29 |
| KRH59502 | Soybean | cytosol | 25.0 | 4.08 |
| KRH53822 | Soybean | cytosol | 25.0 | 4.04 |
| KRH43942 | Soybean | cytosol, mitochondrion, nucleus | 8.33 | 3.95 |
| KRH43368 | Soybean | vacuole | 25.0 | 3.75 |
| Bra026640.1-P | Field mustard | cytosol | 4.17 | 0.96 |
| CDY14507 | Canola | cytosol | 0.0 | 0.0 |
| VIT_08s0058g00020.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:OQU81472 | EnsemblPlantsGene:SORBI_3006G063400 | ProteinID:KXG26202.1 | ProteinID:OQU81472 | ProteinID:OQU81472.1 | ProteinID:OQU81473.1 |
| SEG:seg | UniParc:UPI00081AD1EA | UniProt:A0A1B6PKK4 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr6:-:42184148..42186970
Molecular Weight (calculated)
7868.5 Da
IEP (calculated)
4.819
GRAVY (calculated)
0.118
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: MVTMEVVQWT SLWGFFKNEY ETEKNLLGGA LGAKAAGDLK LSITDHDISW LSPSTMRGLP SVGLQNLLSL SL
001: MRLAENVAGT RKAATEILKL CFEAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTLDIETRIE LIKTLNNVAA GKIYVEIERA RLTKMLAKIK
101: EEQGLIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDQKDFVRAQ ILSRKINPRV FDADTTKEKK KPKEGENMVE EAPADIPTLL VLKRIYYELM
201: IRYYSHNNEY IEICRSYKAI YDIPSVKENP EQWIPVLRKI CWFLALAPHD PMQSSLLNAT LEDKKLSEIP DFKMLLKQIV TMEVIQWTSL WNKYKDEFEN
301: EKNMIGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITFKR LAELLCLTTE EAEKHLSEMV VSKALIAKID RPSGIICFQI VKDSNEILNS WATNLEKLLD
401: LVEKSCHQIH KETMVHKVAL RA
101: EEQGLIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDQKDFVRAQ ILSRKINPRV FDADTTKEKK KPKEGENMVE EAPADIPTLL VLKRIYYELM
201: IRYYSHNNEY IEICRSYKAI YDIPSVKENP EQWIPVLRKI CWFLALAPHD PMQSSLLNAT LEDKKLSEIP DFKMLLKQIV TMEVIQWTSL WNKYKDEFEN
301: EKNMIGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITFKR LAELLCLTTE EAEKHLSEMV VSKALIAKID RPSGIICFQI VKDSNEILNS WATNLEKLLD
401: LVEKSCHQIH KETMVHKVAL RA
Arabidopsis Description
RPN5B26S proteasome non-ATPase regulatory subunit 12 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8VWK0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.