CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43368	Soybean	vacuole	98.64	90.62
KRH64121	Soybean	cytosol	89.57	89.16
VIT_07s0031g01970.t01	Wine grape	cytosol	88.66	87.47
KRH53822	Soybean	cytosol	88.21	87.42
GSMUA_Achr2P16950_001	Banana	cytosol	83.45	87.2
GSMUA_Achr4P23680_001	Banana	cytosol	81.63	85.31
Os03t0851300-01	Rice	cytosol	85.26	84.88
Solyc04g051370.2.1	Tomato	nucleus	85.03	84.84
Solyc04g012040.2.1	Tomato	cytosol	84.58	84.39
CDX81147	Canola	cytosol	80.73	84.36
CDY40066	Canola	cytosol	80.73	84.36
PGSC0003DMT400060796	Potato	cytosol	84.35	84.16
CDX69878	Canola	cytosol	80.27	83.89
Bra009074.1-P	Field mustard	cytosol	80.05	83.65
CDY21613	Canola	cytosol	80.05	83.65
CDY56539	Canola	cytosol, nucleus	72.34	83.51
Bra006038.1-P	Field mustard	cytosol	79.59	83.18
EER90506	Sorghum	cytosol	83.45	83.07
EES07793	Sorghum	cytosol	83.22	82.84
TraesCS5D01G543600.1	Wheat	golgi, unclear	82.99	82.81
TraesCS4A01G329600.1	Wheat	cytosol	82.77	82.39
TraesCS5B01G544500.1	Wheat	cytosol	82.54	82.17
Zm00001d012844_P002	Maize	plasma membrane	82.31	81.94
Zm00001d018523_P003	Maize	extracellular	82.09	81.72
CDX85790	Canola	cytosol	82.99	81.7
Bra028611.1-P	Field mustard	cytosol	82.99	81.7
Zm00001d009068_P002	Maize	extracellular	36.96	80.3
AT5G64760.1	Thale cress	cytosol	79.82	79.64
PGSC0003DMT400050736	Potato	cytosol	85.03	79.62
Bra026640.1-P	Field mustard	cytosol	55.56	78.53
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	81.86	78.14
KRH43942	Soybean	cytosol, mitochondrion, nucleus	26.3	76.32
HORVU5Hr1G122430.1	Barley	plastid	82.54	75.21
VIT_12s0035g00780.t01	Wine grape	cytosol	14.29	68.48
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	28.57	64.29
VIT_08s0058g00020.t01	Wine grape	cytosol	11.79	63.41
AT5G09900.3	Thale cress	nucleus	65.76	62.77
CDY14507	Canola	cytosol	9.07	55.56
OQU77597	Sorghum	plastid	7.94	34.65
OQU81472	Sorghum	extracellular	4.08	25.0

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100817016	MapMan:19.2.6.2.2.4	EMBL:ACUP02003326	EnsemblPlantsGene:GLYMA_05G186600	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031595	GO:GO:0043161
UniProt:I1K4U3	InterPro:IPR000717	InterPro:IPR036388	EnsemblPlants:KRH59502	ProteinID:KRH59502	ProteinID:KRH59502.1
ProteinID:KRH59503.1	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	InterPro:PSMD12	PANTHER:PTHR10855
PANTHER:PTHR10855:SF1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000233A0F3	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:37315972..37321218

Molecular Weight (calculated)

50377.5 Da

IEP (calculated)

7.401

GRAVY (calculated)

-0.205

Length

441 amino acids

Sequence
(BLAST)

001: MANTGNLDAA IEQLLNVEKQ MRLAGDVAGT RKAATDILQL CFDARAWKTL NDQIVVLSKR RGQLKQAVTA MVQQAMQYID ETPDIETRIE LIKTLNSVSA
101: GKIYVEIERA RLIKKLAKIK EEQGLIAEAA DLMQEIAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKISPRV FDADLSKEKK KPKEGDNVVE
201: EAPADIPSLL ELKQIYYELM IRYYSHNNDY LEICRCYKAI YEIPSVKEDP AKWIPILRKI CWYLVLAPYD PMQSSLLNST LEDKNISEIP NFKLLLKQLV
301: TMEVIQWTTL WDTYKSDFEN EKASGKSLGE KAAEDLRQRI IEHNILVVSK YYARITLKRL AELLCLSIQD AEKHLSDMVV SKALVAKIDR PMGIVCFQTA
401: KDSNEILNSW AANLEKLLDL VEKSCHQIHK ETMVHKAALK V

Best Arabidopsis Sequence Match ( AT5G09900.2 )
(BLAST)

001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.