Factsheet for Bra006038.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56539	Canola	cytosol, nucleus	88.63	97.91
Bra009074.1-P	Field mustard	cytosol	96.21	96.21
Bra028611.1-P	Field mustard	cytosol	96.21	90.62
Bra026640.1-P	Field mustard	cytosol	62.8	84.94
GSMUA_Achr2P16950_001	Banana	cytosol	81.28	81.28
GSMUA_Achr4P23680_001	Banana	cytosol	80.33	80.33
KRH59502	Soybean	cytosol	83.18	79.59
Solyc04g012040.2.1	Tomato	cytosol	82.46	78.73
PGSC0003DMT400060796	Potato	cytosol	82.23	78.51
VIT_07s0031g01970.t01	Wine grape	cytosol	82.94	78.3
Solyc04g051370.2.1	Tomato	nucleus	81.99	78.28
Os03t0851300-01	Rice	cytosol	80.57	76.75
KRH64121	Soybean	cytosol	79.62	75.85
EER90506	Sorghum	cytosol	79.38	75.62
Zm00001d009068_P002	Maize	extracellular	36.26	75.37
TraesCS5D01G543600.1	Wheat	golgi, unclear	78.91	75.34
KRH53822	Soybean	cytosol	79.38	75.28
EES07793	Sorghum	cytosol	78.91	75.17
TraesCS4A01G329600.1	Wheat	cytosol	78.91	75.17
TraesCS5B01G544500.1	Wheat	cytosol	78.67	74.94
Zm00001d012844_P002	Maize	plasma membrane	77.96	74.27
PGSC0003DMT400050736	Potato	cytosol	82.23	73.67
Zm00001d018523_P003	Maize	extracellular	76.78	73.14
KRH43368	Soybean	vacuole	82.46	72.5
AT5G09900.3	Thale cress	nucleus	76.07	69.48
KRH43942	Soybean	cytosol, mitochondrion, nucleus	24.41	67.76
VIT_12s0035g00780.t01	Wine grape	cytosol	10.66	48.91
HORVU5Hr1G035770.1	Barley	cytosol	5.45	41.07
VIT_08s0058g00020.t01	Wine grape	cytosol	7.58	39.02
OQU77597	Sorghum	plastid	9.0	37.62
OQU81472	Sorghum	extracellular	5.21	30.56

Protein Annotations

EnsemblPlants:Bra006038.1	EnsemblPlants:Bra006038.1-P	EnsemblPlantsGene:Bra006038	Gene3D:1.10.10.10	InterPro:IPR000717	InterPro:IPR036388
InterPro:PCI_dom	InterPro:PSMD12	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1
PFAM:PF01399	PFscan:PS50250	SEG:seg	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI000058E023	UniProt:M4CPA0	MapMan:19.2.6.2.2.4	:	:	:

Description

AT5G09900 (E=3e-223) EMB2107, RPN5A, MSA | EMB2107 (EMBRYO DEFECTIVE 2107)

Coordinates

chrA03:-:1711496..1714213

Molecular Weight (calculated)

48670.5 Da

IEP (calculated)

7.429

GRAVY (calculated)

-0.266

Length

422 amino acids

Sequence
(BLAST)

001: MRLAENVAGT RKAATEILQL CFEAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETKIE LIKTLNNVSA GKIYVEIERA RLTRKLAKIK
101: EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKINPRV FDADTKIDKK KPKEGENIVE EAPADIPSLL ELKRIYYELM
201: IRYYSHNNEY LEICRSYKAI YDIPSVKENP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDNNLSEIP DFKMLLKQVV TMEVIQWTAL WNKYKDEFEK
301: EKSLIGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITLRR LAELLCLSIE EAEKYLSEMV VSKALIAKID RPSGVVCFQI AKDSNEILNS WAVNLEKLLD
401: LVEKSCHQIH KETMVHKAVL RS

Best Arabidopsis Sequence Match ( AT5G09900.2 )
(BLAST)

001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.