CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009068_P002	Maize	extracellular	62.5	46.8
CDY14507	Canola	cytosol	17.76	37.5
KRH53822	Soybean	cytosol	83.55	28.54
KRH64121	Soybean	cytosol	82.89	28.44
CDY56539	Canola	cytosol, nucleus	69.08	27.49
KRH59502	Soybean	cytosol	76.32	26.3
GSMUA_Achr4P23680_001	Banana	cytosol	71.71	25.83
VIT_07s0031g01970.t01	Wine grape	cytosol	73.68	25.06
Bra026640.1-P	Field mustard	cytosol	51.32	25.0
GSMUA_Achr2P16950_001	Banana	cytosol	69.08	24.88
CDY40066	Canola	cytosol	69.08	24.88
Solyc04g051370.2.1	Tomato	nucleus	71.71	24.66
CDX81147	Canola	cytosol	68.42	24.64
CDY21613	Canola	cytosol	67.76	24.41
CDX69878	Canola	cytosol	67.76	24.41
Bra009074.1-P	Field mustard	cytosol	67.76	24.41
Bra006038.1-P	Field mustard	cytosol	67.76	24.41
Zm00001d012844_P002	Maize	plasma membrane	71.05	24.38
Os03t0851300-01	Rice	cytosol	70.39	24.15
EES07793	Sorghum	cytosol	70.39	24.15
TraesCS5D01G543600.1	Wheat	golgi, unclear	69.74	23.98
KRH43368	Soybean	vacuole	75.66	23.96
TraesCS4A01G329600.1	Wheat	cytosol	69.74	23.93
EER90506	Sorghum	cytosol	69.74	23.93
Solyc04g012040.2.1	Tomato	cytosol	69.08	23.76
PGSC0003DMT400060796	Potato	cytosol	69.08	23.76
TraesCS5B01G544500.1	Wheat	cytosol	69.08	23.7
Zm00001d018523_P003	Maize	extracellular	69.08	23.7
CDX85790	Canola	cytosol	69.08	23.44
Bra028611.1-P	Field mustard	cytosol	69.08	23.44
AT5G64760.1	Thale cress	cytosol	67.76	23.3
PGSC0003DMT400050736	Potato	cytosol	71.71	23.14
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	69.74	22.94
AT5G09900.3	Thale cress	nucleus	68.42	22.51
HORVU5Hr1G122430.1	Barley	plastid	69.74	21.9
OQU77597	Sorghum	plastid	13.16	19.8
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	24.34	18.88
OQU81472	Sorghum	extracellular	3.95	8.33
VIT_08s0058g00020.t01	Wine grape	cytosol	0.0	0.0
VIT_12s0035g00780.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02004905	EnsemblPlants:KRH43942	EnsemblPlantsGene:GLYMA_08G182000	InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1
ProteinID:KRH43942	ProteinID:KRH43942.1	UniParc:UPI0006EDC64E	UniProt:A0A0R0INQ5	MapMan:19.2.6.2.2.4	:

Description

hypothetical protein

Coordinates

chr8:+:14600957..14603832

Molecular Weight (calculated)

17988.9 Da

IEP (calculated)

8.559

GRAVY (calculated)

-0.389

Length

152 amino acids

Sequence
(BLAST)

001: MARSSRSHTR VFDANVTKEK KKSKEGDNVV EEALADIPSL PELKRIYYEL MIRYYSHKND YLEICCCYKA IYEIPSVKRK SCRILRKICW YLVLSLRIPM
101: QSSLINSTLE DKNLSEIRNF KLLLKQLVTM EVIQCTTLWD SYKDEFENES VT

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.