Factsheet for HORVU5Hr1G122560.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G543600.1	Wheat	golgi, unclear	93.51	97.74
TraesCS4A01G329600.1	Wheat	cytosol	93.29	97.29
TraesCS5B01G544500.1	Wheat	cytosol	93.07	97.07
HORVU5Hr1G122430.1	Barley	plastid	94.59	90.29
Os03t0851300-01	Rice	cytosol	86.15	89.84
EER90506	Sorghum	cytosol	83.77	87.36
EES07793	Sorghum	cytosol	83.12	86.68
Zm00001d012844_P002	Maize	plasma membrane	82.9	86.46
Zm00001d018523_P003	Maize	extracellular	80.95	84.42
GSMUA_Achr2P16950_001	Banana	cytosol	76.41	83.65
Zm00001d009068_P002	Maize	extracellular	36.36	82.76
GSMUA_Achr4P23680_001	Banana	cytosol	75.32	82.46
KRH59502	Soybean	cytosol	78.14	81.86
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	34.63	81.63
VIT_07s0031g01970.t01	Wine grape	cytosol	76.41	78.97
KRH64121	Soybean	cytosol	74.89	78.1
KRH53822	Soybean	cytosol	74.24	77.08
KRH43368	Soybean	vacuole	77.71	74.79
KRH43942	Soybean	cytosol, mitochondrion, nucleus	22.94	69.74
HORVU5Hr1G035770.1	Barley	cytosol	6.93	57.14
VIT_12s0035g00780.t01	Wine grape	cytosol	11.04	55.43
VIT_08s0058g00020.t01	Wine grape	cytosol	9.09	51.22

Protein Annotations

EnsemblPlants:HORVU5Hr1G122560.2	EnsemblPlantsGene:HORVU5Hr1G122560	Gene3D:1.10.10.10	InterPro:IPR000717	InterPro:IPR036388	InterPro:PCI_dom
InterPro:PSMD12	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	PFAM:PF01399
PFscan:PS50250	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000B47F46B	UniProt:A0A287T018
MapMan:19.2.6.2.2.4	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:662352702..662356829

Molecular Weight (calculated)

52466.9 Da

IEP (calculated)

8.235

GRAVY (calculated)

-0.204

Length

462 amino acids

Sequence
(BLAST)

001: GSSGLDAAIE SLLNTEKQCR LAGDVAGTRK AAVDIVELCF KDGAWKTLND QIVVLSKRRG QLKQAITAVV QKAMEYIDVA PDVETRIELI KTLSSVAAGK
101: IYVEIERARL IKRLAKIKEE QGKIDEAAEI MQEVAVETFG SMAKTEKLAF ILEQVRLCLD RQDYVRAQIL SRKISPRVFD ADTSKDKKKP KDGDNMVQEA
201: PADVPSLLEL KRIYYELMIR YYSHNNDYLE ICRCYKSIYE IPSIKEDPAK WTPILRKICW YLVLAPHDPM QSSLLNATLE DKNLSEIPNF RLLLKQVVTM
301: EVIQWTKLWE FFKDEYENEK NLLGGALGTK AAEDLKLRII EHNILVVSKY YSRISLKRLA DLLCLSLQEA EKHISDMVNS KALIAKIDRP MGIVSFRTAQ
401: DSNGVLNSWA SNLEKLLDLV EKSCHQIHKE TMIHKVKQFS AQVRASPVCF GNSCVRTGLE IL

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.