Factsheet for Zm00001d012844_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90506	Sorghum	cytosol	95.26	95.26
Zm00001d009068_P002	Maize	extracellular	42.89	93.6
Zm00001d018523_P003	Maize	extracellular	92.33	92.33
Os03t0851300-01	Rice	cytosol	92.33	92.33
TraesCS4A01G329600.1	Wheat	cytosol	88.04	88.04
TraesCS5B01G544500.1	Wheat	cytosol	87.58	87.58
TraesCS5D01G543600.1	Wheat	golgi, unclear	87.36	87.56
GSMUA_Achr2P16950_001	Banana	cytosol	81.26	85.31
GSMUA_Achr4P23680_001	Banana	cytosol	79.46	83.41
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	86.46	82.9
KRH59502	Soybean	cytosol	81.94	82.31
VIT_07s0031g01970.t01	Wine grape	cytosol	81.26	80.54
HORVU5Hr1G122430.1	Barley	plastid	87.13	79.75
CDY56539	Canola	cytosol, nucleus	68.62	79.58
KRH64121	Soybean	cytosol	79.23	79.23
Solyc04g051370.2.1	Tomato	nucleus	78.78	78.96
CDX81147	Canola	cytosol	75.17	78.91
KRH53822	Soybean	cytosol	78.56	78.2
CDY40066	Canola	cytosol	74.49	78.2
Solyc04g012040.2.1	Tomato	cytosol	77.88	78.05
CDX69878	Canola	cytosol	74.27	77.96
Bra006038.1-P	Field mustard	cytosol	74.27	77.96
PGSC0003DMT400060796	Potato	cytosol	77.65	77.83
Bra009074.1-P	Field mustard	cytosol	74.04	77.73
CDY21613	Canola	cytosol	74.04	77.73
CDX85790	Canola	cytosol	77.2	76.34
Bra028611.1-P	Field mustard	cytosol	77.2	76.34
KRH43368	Soybean	vacuole	81.49	75.21
AT5G64760.1	Thale cress	cytosol	74.72	74.89
Bra026640.1-P	Field mustard	cytosol	52.6	74.68
PGSC0003DMT400050736	Potato	cytosol	78.33	73.67
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	32.05	72.45
KRH43942	Soybean	cytosol, mitochondrion, nucleus	24.38	71.05
VIT_12s0035g00780.t01	Wine grape	cytosol	12.87	61.96
AT5G09900.3	Thale cress	nucleus	62.08	59.52
VIT_08s0058g00020.t01	Wine grape	cytosol	10.38	56.1
CDY14507	Canola	cytosol	9.03	55.56

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100382103	MapMan:19.2.6.2.2.4	ProteinID:AQK61567.1	EMBL:BT063155	UniProt:C0P4D6
ncoils:Coil	GO:GO:0000502	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	InterPro:IPR000717
InterPro:IPR036388	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	InterPro:PSMD12	PANTHER:PTHR10855
PANTHER:PTHR10855:SF1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0001948DD9	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d012844	EnsemblPlants:Zm00001d012844_P002	EnsemblPlants:Zm00001d012844_T002	SEG:seg	:

Description

26S proteasome non-ATPase regulatory subunit 12 homolog B

Coordinates

chr5:+:1060873..1065790

Molecular Weight (calculated)

50546.8 Da

IEP (calculated)

7.468

GRAVY (calculated)

-0.188

Length

443 amino acids

Sequence
(BLAST)

001: MEGDSTNLDA AIESLLNVEK QMRLAGDVAG TRKAVIDIVE LCYKAGAWKT LNDQIVLLSK RRGQLKQAIT AMVQKAMDYI DLTPDIDTRV ELIKTLSSVS
101: AGKIYVEIER ARLIKRLANI KEEQGKIDEA ADLMQEVAVE TFGSMAKTEK IAFILEQVRL CLDRQDYVRA QILSRKISTR VFDADPSKEK KKPKEGDNIV
201: QDAPADIPSL LELKRIYYEL MIRYYLHNND YLEICRCYKA IYDIPAIKED PTKWIPILRK ICWYLVLAPH DPMQSSLLNA TLEDKNLSEI PNFRLLLKQL
301: VTMEVIQWTA LWEFSKHEFE NEKNLLGGAL GAKAAEDLKL RIIEHNILVV SKYYSRVTIK RLADLLCLSL QEAEKHLSDM VNSKSLTAKI DRPMGVVSFR
401: VVQDCNGTLN SWATNLEQLL DLVEKSCHQI HKETMIHKAV LKA

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.