Factsheet for Solyc04g051370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050736	Potato	cytosol	98.42	92.36
Solyc04g012040.2.1	Tomato	cytosol	91.18	91.18
KRH59502	Soybean	cytosol	84.84	85.03
VIT_07s0031g01970.t01	Wine grape	cytosol	85.97	85.01
GSMUA_Achr2P16950_001	Banana	cytosol	79.64	83.41
KRH64121	Soybean	cytosol	83.48	83.3
CDY40066	Canola	cytosol	79.19	82.94
CDX81147	Canola	cytosol	78.96	82.7
CDY56539	Canola	cytosol, nucleus	71.27	82.46
Bra006038.1-P	Field mustard	cytosol	78.28	81.99
GSMUA_Achr4P23680_001	Banana	cytosol	78.28	81.99
CDY21613	Canola	cytosol	78.28	81.99
KRH53822	Soybean	cytosol	82.35	81.8
CDX69878	Canola	cytosol	78.05	81.75
Bra009074.1-P	Field mustard	cytosol	77.83	81.52
Os03t0851300-01	Rice	cytosol	81.67	81.49
CDX85790	Canola	cytosol	81.45	80.36
Bra028611.1-P	Field mustard	cytosol	81.45	80.36
AT5G64760.1	Thale cress	cytosol	80.09	80.09
EER90506	Sorghum	cytosol	80.09	79.91
TraesCS5D01G543600.1	Wheat	golgi, unclear	79.19	79.19
EES07793	Sorghum	cytosol	78.96	78.78
Zm00001d012844_P002	Maize	plasma membrane	78.96	78.78
TraesCS4A01G329600.1	Wheat	cytosol	78.73	78.56
TraesCS5B01G544500.1	Wheat	cytosol	78.28	78.1
KRH43368	Soybean	vacuole	84.39	77.71
Zm00001d018523_P003	Maize	extracellular	77.38	77.2
Bra026640.1-P	Field mustard	cytosol	52.94	75.0
Zm00001d009068_P002	Maize	extracellular	33.71	73.4
KRH43942	Soybean	cytosol, mitochondrion, nucleus	24.66	71.71
VIT_12s0035g00780.t01	Wine grape	cytosol	14.03	67.39
AT5G09900.3	Thale cress	nucleus	64.03	61.26
VIT_08s0058g00020.t01	Wine grape	cytosol	10.86	58.54
CDY14507	Canola	cytosol	9.28	56.94
HORVU5Hr1G035770.1	Barley	cytosol	5.66	44.64
OQU77597	Sorghum	plastid	9.05	39.6
OQU81472	Sorghum	extracellular	5.2	31.94

Protein Annotations

Gene3D:1.10.10.10	MapMan:19.2.6.2.2.4	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031595	GO:GO:0043161	InterPro:IPR000717	InterPro:IPR036388	UniProt:K4BS97
InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc04g051370.2	EnsemblPlants:Solyc04g051370.2.1	UniParc:UPI0002766FAD
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:50439887..50448768

Molecular Weight (calculated)

50652.9 Da

IEP (calculated)

7.520

GRAVY (calculated)

-0.264

Length

442 amino acids

Sequence
(BLAST)

001: MEGDGKLEAQ IEVLLNVEKQ MRQAGDVAAT RKAAIDILQL CFEARAWKTL NEQIVLLSKR RGQLKQAVQA MVQQAMQYID QTPDLDTKIE LIKTLNSVSA
101: GKIYVEIERA RLIKKLAKIK EEQKLIGEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDHKDYVRAQ ILSRKINPRV FEADPSKEKK KAKEGENVVE
201: EPAADIPSLP ELKQIYYQLM IRYYSHSNDY LEICRCYKAI YEIPSVKEDP AQWIPVLRKI CWYLVLSPHD SMQSSLHNST LEDKNLSEIP HFRLLLKQLI
301: TMEVIQWTAL WNTFKDEFEN EKNMPGGTLG DKAAEDLKLR VIEHNILVVS KYYSRITLKR LAVLLCLDIQ EAEKHLSEMV VSKALVAKID RPMGIVCFQP
401: PKDSNDILNS WASNLEKLLD LVEKSCHQIH KETMVHKAAL KA

Best Arabidopsis Sequence Match ( AT5G09900.2 )
(BLAST)

001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.